HTTP and GUI apps. In Eureka: Admin Apps → Catalog → Download, then Library → Create app. Each row is one container version.
| Category | Name | App version | Container | Min CPU/RAM | Get |
|---|---|---|---|---|---|
| ide | VS Code | 4.96.4 | 4.96.4 | 2c / 4G | SIF·sha256·json |
| notebook | JupyterLab | scipy-notebook | 2026.08 | 2c / 8G | SIF·sha256·json |
| notebook | Jupyter Data Science | datascience-notebook | 2026.08 | 2c / 8G | SIF·sha256·json |
| machine-learning | Jupyter PyTorch | pytorch-notebook CUDA 12 | 2026.08 | 4c / 16G | SIF·sha256·json |
| machine-learning | Jupyter TensorFlow | tensorflow-notebook CUDA | 2026.08 | 4c / 16G | SIF·sha256·json |
| — | Matlab-Ubuntu | — | r2026a | 2c / 4G | SIF·sha256·json |
| statistics | Octave | GNU Octave | 2026.08 | 2c / 4G | SIF·sha256·json |
| llm | Ollama | ollama | 2026.08 | 4c / 16G | SIF·sha256·json |
| llm | Open WebUI | open-webui | 2026.08 | 2c / 4G | SIF·sha256·json |
| visualization | ParaView | ParaView GUI | 2026.08 | 4c / 16G | SIF·sha256·json |
| notebook | Pluto.jl | Pluto.jl | 2026.08 | 2c / 8G | SIF·sha256·json |
| gis | QGIS | QGIS | 2026.08 | 2c / 8G | SIF·sha256·json |
| statistics | RStudio Server | 4.5.3 | 2026.08 | 2c / 8G | SIF·sha256·json |
| notebook | SageMath | SageMath | 2026.09 | 2c / 4G | SIF·sha256·json |
| web | Shiny | 4.5.3 | 2026.08 | 2c / 4G | SIF·sha256·json |
| ide | Spyder | spyder | 2026.08 | 2c / 8G | SIF·sha256·json |
| shell | Terminal | ttyd | 2026.08 | 1c / 2G | SIF·sha256·json |
| — | Ubuntu Desktop | — | 2026.09 | 2c / 4G | SIF·sha256·json |
| — | Ubuntu Terminal | — | 2026.09 | 1c / 2G | SIF·sha256·json |
| No matching apps. | |||||
Batch CLI SIFs. In Eureka: Admin Apps → Catalog → Download, then pick the SIF in the flow editor. Do not Create app as a desktop session.
| Category | Name | App version | Container | Min CPU/RAM | Get |
|---|---|---|---|---|---|
| visualization | FFmpeg | 5.1.9 | 2026.09 | 2c / 4G | SIF·sha256·json |
| gis | GDAL | 3.6.2 | 2026.09 | 1c / 2G | SIF·sha256·json |
| hpc | GROMACS | 2022.5 | 2026.09 | 4c / 8G | SIF·sha256·json |
| hpc | GROMACS GPU | 2024.3 CUDA 12.4 | 2026.09 | 4c / 16G | SIF·sha256·json |
| hpc | LAMMPS | 2022.01.06 | 2026.09 | 2c / 4G | SIF·sha256·json |
| bioinformatics | NCBI BLAST+ | 2.12.0+ | 2026.09 | 1c / 4G | SIF·sha256·json |
| bioinformatics | NGS tools | samtools 1.16.1, bwa 0.7.17, fastqc 0.11.9 | 2026.09 | 2c / 8G | SIF·sha256·json |
| hpc | OpenFOAM | v2512 | 2026.09 | 4c / 8G | SIF·sha256·json |
| visualization | ParaView Batch | 5.13.3 | 2026.09 | 4c / 16G | SIF·sha256·json |
| machine-learning | PyTorch | 2.5.1+cu124 | 2026.09 | 4c / 16G | SIF·sha256·json |
| machine-learning | PyTorch CPU | 2.14.0+cpu | 2026.09 | 2c / 8G | SIF·sha256·json |
| hpc | Quantum ESPRESSO | 6.7 | 2026.09 | 4c / 8G | SIF·sha256·json |
| hpc | RELION | 5.0 | 2026.09 | 8c / 32G | SIF·sha256·json |
| machine-learning | TensorFlow | 2.18.0-gpu | 2026.09 | 4c / 16G | SIF·sha256·json |
| llm | vLLM | 0.8.5 | 2026.09 | 4c / 24G | SIF·sha256·json |
| hpc | WRF | WRF/WPS 4.6 | 2026.09 | 4c / 16G | SIF·sha256·json |
| No matching apps. | |||||
Portable JSON for Eureka Flows → Examples → Import (into the project you are viewing; nothing is added automatically). Download the matching Flow SIF first. Export from the editor is the same format.
| Name | What it does | SIF | Get |
|---|---|---|---|
| BLAST+ sample | Tiny FASTA → makeblastdb/blastn | ncbi-blast/2026.09 | json |
| FFmpeg sample | 1s test pattern → mp4 | ffmpeg/2026.09 | json |
| GDAL sample | Create a 16x16 GeoTIFF and run gdalinfo | gdal/2026.09 | json |
| GROMACS GPU sample | gmx --version on the CUDA SIF (needs --nv / GPU SKU) | gromacs-gpu/2026.09 | json |
| GROMACS CPU sample | gmx pdb2gmx on a two-residue peptide (CPU SIF) | gromacs/2026.09 | json |
| LAMMPS melt | in.melt ~10 steps | lammps/2026.09 | json |
| NGS tools sample | Tiny FASTQ through fastqc + samtools | ngs-tools/2026.09 | json |
| OpenFOAM cavity | icoFoam cavity tutorial (blockMesh + icoFoam) | openfoam/2026.09 | json |
| ParaView Batch sample | Offscreen sphere screenshot via pvbatch (not the Launch GUI SIF) | paraview-batch/2026.09 | json |
| PyTorch CPU sample | import torch on the CPU SIF | pytorch-cpu/2026.09 | json |
| PyTorch CUDA sample | import torch and report CUDA on the GPU SIF | pytorch/2026.09 | json |
| Quantum ESPRESSO sample | pw.x -h; silicon SCF needs a UPF pseudo on vault | quantum-espresso/2026.09 | json |
| RELION sample | relion_refine_mpi help (CUDA SIF; host --nv). Compile still operator-run. | relion/2026.09 | json |
| TensorFlow sample | import tensorflow and list devices on the GPU SIF | tensorflow/2026.09 | json |
| vLLM sample | Print vLLM version (serve a vault checkpoint separately; needs GPU) | vllm/2026.09 | json |
| WRF sample | WPS/WRF binaries (GEOG/GRIB stay on vault). | wrf/2026.09 | json |
| No matching samples. | |||