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1. hkjeldsberg commented on Oct 27, 2022

   

   hkjeldsberg

   on Oct 27, 2022

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   HI @SMSadat98 ,

   Thanks for reporting this! The error is likely caused by estimate_alpha_and_beta() not following the standard way (in morphman) of fetching the default arguments, thus the default parameter smooth is not required for this method.
   Instead, you can get the default parameters for this particular method by importing them directly in your script. As an example, consider the following script – run_estimate.py:

   from morphman.misc.estimate_alpha_and_beta import read_command_line, estimate_alpha_and_beta
   
   # Get default command line arguments
   default_values = read_command_line()
   
   # Overwrite default arguments
   default_values["region_points"] = []
   default_values["value_change"] = 10
   default_values["grid_size"] = 25
   default_values["region_of_interest"] = "manual"
   default_values["region_points"] = []
   
   # Call method
   estimate_alpha_and_beta(**default_values)
   

   And this can be run with the following command (with angle as the quantity of interest):

   python run_estimate.py --ifile my_model.vtp --quantity angle
   

   Hope this helps!

   Best,
   Henrik