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Some issues with landmark_atrium.py #87
Description
Hi @hkjeldsberg
I tried to use landmark_atrium.py, but faced some issues. I found some fixes, but not for all of them.
The first problem is parsing the input file:
morphMan/src/morphman/landmark_atrium.py
Line 316 in aeeaa5b
args do not have input_path, and this should be fixed as:
return dict(input_path=args.ifile, resampling_step=args.resampling_step) Secondly, I faced an issue with:
morphMan/src/morphman/landmark_atrium.py
Line 166 in aeeaa5b
Changing the end_id=id_stop to end_id=None seemed to avoid the error.
However, I still get an error with:
morphMan/src/morphman/landmark_atrium.py
Line 170 in aeeaa5b
The error is as follows:
File “/morphMan/src/morphman/landmark_atrium.py", line 170, in separate_left_atrium_and_appendage
line = compute_splined_centerline(line, nknots=10, isline=True)
File “/morphMan/src/morphman/common/centerline_operations.py", line 932, in compute_splined_centerline
misr = get_point_data_array(radiusArrayName, line)
File “/morphMan/src/morphman/common/vtk_wrapper.py", line 328, in get_point_data_array
data_array = line.GetPointData().GetArray(array_name).GetTuple1
AttributeError: 'NoneType' object has no attribute 'GetTuple1'
At this point, I stopped investigating further since it was not straightforward to identify the problem. Could you please look into this?
Best,
Kei
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