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@LarsonLab

UCSF Peder Larson Research Group

Software projects for imaging technology developed in Larson Group at UCSF

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  1. hyperpolarized-mri-toolbox hyperpolarized-mri-toolbox Public

    The goal of this toolbox is to provide open-source research-level and prototyping software tools for hyperpolarized MRI experiments. It is currently based on MATLAB/Octave code, and includes code f…

    Jupyter Notebook 51 35

  2. Spectral-Spatial-RF-Pulse-Design Spectral-Spatial-RF-Pulse-Design Public

    This package includes Matlab functions to design spectral-spatial RF pulses (also known as spatial-spectral RF pulses) for application to magnetic resonance spectroscopy and imaging

    MATLAB 29 20

  3. dnlinv dnlinv Public

    Reconstruction code and reproducible reconstruction scripts for DNLINV paper

    Python 10 2

  4. UTEMRI_Brain UTEMRI_Brain Public

    Processing ultrashort echo time (UTE) MRI data in the Brain

    Jupyter Notebook 9 8

  5. MRI-education-resources MRI-education-resources Public

    Resources for learning the principles of magnetic resonance imaging (MRI)

    Jupyter Notebook 187 47

  6. Radial-Field-of-Views Radial-Field-of-Views Public

    Radial sampling patterns in frequency space to support anisotropic field of views (FOVs) in the dual domain

    MATLAB 15 4

Repositories

Showing 10 of 24 repositories
  • MRI-education-resources Public

    Resources for learning the principles of magnetic resonance imaging (MRI)

    LarsonLab/MRI-education-resources's past year of commit activity
    Jupyter Notebook 187 MIT 47 7 0 Updated Oct 1, 2026
  • ilumr-courseware Public Forked from Resonint/ilumr-courseware

    Courseware for the ilumr educational MRI system

    LarsonLab/ilumr-courseware's past year of commit activity
    HTML 0 MIT 6 2 0 Updated Oct 1, 2026
  • open-data-registry Public Forked from awslabs/open-data-registry

    A registry of publicly available datasets on AWS

    LarsonLab/open-data-registry's past year of commit activity
    Python 0 Apache-2.0 1,250 0 1 Updated Sep 17, 2026
  • UCSF-ProstateMR Public

    Prostate multiparametric MRI dataset with 973 exams as well as biopsy annotations, PI-RADS scores, and other clinical metadata. doi: :10.58078/C2MW2X

    LarsonLab/UCSF-ProstateMR's past year of commit activity
    Jupyter Notebook 1 MIT 0 0 0 Updated Sep 17, 2026
  • LarsonLab.github.io Public

    Research group web site, with a focus on blog-style content

    LarsonLab/LarsonLab.github.io's past year of commit activity
    JavaScript 0 MIT 1 4 3 Updated Sep 16, 2026
  • hyperpolarized-mri-toolbox Public

    The goal of this toolbox is to provide open-source research-level and prototyping software tools for hyperpolarized MRI experiments. It is currently based on MATLAB/Octave code, and includes code for designing radiofrequency (RF) pulses, imaging gradients, data reconstruction, and data analysis. doi: 10.5281/zenodo.1198915

    LarsonLab/hyperpolarized-mri-toolbox's past year of commit activity
    Jupyter Notebook 51 BSD-3-Clause 35 11 1 Updated Jul 18, 2026
  • UCSF-RMaC Public template

    A dataset of 831 3D Multiphase CT exams of renal masses from UCSF. doi:10.58078/C2WC74

    LarsonLab/UCSF-RMaC's past year of commit activity
    Jupyter Notebook 4 MIT 0 1 0 Updated Jul 14, 2026
  • UTEMRI_Brain Public

    Processing ultrashort echo time (UTE) MRI data in the Brain

    LarsonLab/UTEMRI_Brain's past year of commit activity
    Jupyter Notebook 9 8 3 0 Updated Jul 6, 2026
  • UCSF_Xenograft_MRI_Segmentation Public
    LarsonLab/UCSF_Xenograft_MRI_Segmentation's past year of commit activity
    Jupyter Notebook 0 1 0 0 Updated Aug 12, 2025
  • ilumr-resources Public Forked from Resonint/ilumr-resources

    ilumr resources

    LarsonLab/ilumr-resources's past year of commit activity
    Jupyter Notebook 0 MIT 1 0 0 Updated Jun 16, 2025
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