Request changes — the CLI streaming rewrite itself is correct and the stdout/stderr split is a genuine improvement, but two concrete issues should be fixed before merge, and bundling several unrelated changes makes this harder to review/revert.

What's good ✅

• The non-verbose streaming path is functionally sound: result accumulates exactly the keys the CLI consumes downstream — report_body/sarif_report (_write_result), temp_dir_for_cleanup (_cleanup_result), and risk_score (exit code). It keys on output presence rather than node names, so it stays robust to graph changes. total_steps = 4 + len(ANALYZER_NODE_IDS) matches the actual non-analyzer nodes (resolve_input, build_context, meta_analyzer, report), and ANALYZER_NODE_IDS is exported. Existing tests/unit/test_cli.py runs the default (non-verbose) path, so output correctness is covered.
• Routing the progress UI / file tree to a stderr console so stdout stays clean for --format json is the right call.

Please address (blocking)

1. .gitignore: report* is unanchored. A gitignore entry without a leading slash matches that basename at any depth, so report* also matches src/skillspector/nodes/report.py and will silently ignore any future report* source/test file. Please anchor to the generated artifacts, e.g. /report* at repo root, or better, target the actual outputs (/report*.json, /report*.sarif).
2. Trailing whitespace fails ruff check. pyproject.toml selects the W ruleset (only E501 is ignored), and the new CLI block adds ~8 blank lines with trailing whitespace (W293). Please strip them so the change is lint-clean.

Non-blocking suggestions

• Scope/bundling: this PR mixes Gemini model-registry entries, the CLI UX rewrite, a .gitignore change, and an exception-logging tweak. Splitting them would make review and rollback safer.
• warnings.filterwarnings("ignore", category=UserWarning, module="pydantic") is a process-wide, persistent filter. Consider a scoped with warnings.catch_warnings(): around the graph run (or narrowing the message) so unrelated warnings aren't hidden.
• mcp_tool_poisoning.py TP4 handler: switching from exc_info=True to ": %s" drops the traceback. For a security analyzer, keeping exc_info=True (optionally gated on debug level) preserves debuggability when the LLM check fails.
• nv_build/model_registry.yaml: adding gemini-3.5-flash to the nv_build provider registry reads as semantically off, since Gemini is reached via the OpenAI-compatible path; harmless for token budgeting but potentially misleading.
• Minor: the .gitignore (and a couple of the YAML files) end without a trailing newline; the inline imports in the else block could move to module top.

Thanks for the work here — happy to re-review once the gitignore pattern and the lint issues are addressed.

[Automated SkillSpector Review]

Re-review: both blockers resolved — approving.

1. .gitignore is now anchored to repo root with specific extensions (/report*.md|json|sarif), so src/skillspector/nodes/report.py is no longer matched.
2. The trailing-whitespace block in cli.py is cleaned (ruff W293).

All non-blocking items were also handled: the Pydantic warnings filter is now scoped via with warnings.catch_warnings() (no longer process-wide), the TP4 exc_info change was reverted (file no longer in the diff), and gemini-3.5-flash moved out of the nv_build registry into the OpenAI-compatible path. The non-verbose streaming path still accumulates exactly the keys the CLI consumes and routes UI to stderr. Minor cosmetic nit: .gitignore has no trailing newline. Approving.

Re-review — approving. Since my last review the substantive addition is the non-verbose streaming progress UI (graph.stream + Rich progress/file-tree), plus the Gemini-via-OpenAI-compat example and registry entry. The streaming path correctly accumulates the keys the CLI consumes downstream (report_body, sarif_report, risk_score, temp_dir_for_cleanup), and the pydantic warning suppression is scoped to the run.

Non-blocking nits:

• import warnings is inserted before import sys in cli.py (not import-sorted) — likely trips the ruff format/lint check; run ruff format/ruff check --fix.
• .gitignore is missing a trailing newline.
• Consider a small test that the non-verbose path produces the same result keys as the verbose (graph.invoke) path, so the two can't drift.

Comments have been reviewed and implemented.

[Automated SkillSpector Review]

Re-review: approved. The PR-authored change after the prior approval is the requested stream/invoke parity integration test plus import-order/newline cleanup. It exercises all four CLI-consumed result keys, and the current diff preserves the already-approved stderr streaming path and Gemini registry/docs behavior.

Re-review approved at the current head. The prior review feedback remains addressed and there are no unresolved review threads. Merge remains blocked: the merge-updated head fails formatting and nine unit tests around CLI JSON/exit-code behavior, plus DCO; the owner must repair CI before merge.

[SkillSpector Review]

Re-review approved. The new corrective commit propagates execution_successful through the default streaming path, restores the incomplete-execution exit-code contract, and updates JSON assertions for Click 8.2's stdout/stderr behavior. Focused regressions and all required checks pass.

Re-review after rebase onto current main: approved. Conflict resolution preserves current CLI, transitive-analysis, and completeness contracts; streamed scans retain the full graph state; terminal output is escaped and bounded; and all local regression gates plus fresh CI pass.