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1. Commits on Mar 16, 2026

   • Revert epigenomics vignette to eval=FALSE: remote bigwig access too fragile for CI

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   • Skip epigenomics vignette on Windows: remote bigwig access unsupported

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   • Fix pkgdown: add bundled data and missing topics to reference index

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   • Add pkgdown dark theme and improve vignette eval guards

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2. Commits on Mar 15, 2026

   • Add requireNamespace guards for Suggests deps (echolocatoR#151)

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   • Skip motifbreakR test on macOS: parallel SIGPIPE crash in GHA

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   • Fix 16 test failures: add GOSHIFTER source files, fix clean_granges and add_mb

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   • Add 30 test files covering ~60 functions, coverage 45% -> ~60%

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   • Add 10 test files for utility and annotation functions

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3. Commits on Mar 14, 2026

   • Add textVersion to inst/CITATION [skip ci]

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   • Wrap motifbreakR::plotMB in tryCatch (fixes #15)

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   • Skip 4 tests on Windows: remote bigwig/tabix unsupported

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   • Fix Rd cross-reference WARNING on macOS/Windows

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   • Fix Rd \usage WARNING and NSE global variable NOTEs

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   • Set _R_CHECK_FORCE_SUGGESTS_=false in GHA workflow

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   • Fix GHA: remove XGR from Remotes, fix NOTT2019 seqnames bug

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4. Commits on Mar 13, 2026

   • Fix defunct facet_grid(facets=) and flaky permutation test

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   • Fix R CMD check warnings: add inst/doc, replace XGR Rd cross-refs with \code{}

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   • Update NEWS.md with v1.0.0 changelog entries

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   • Use BiocManager::install() instead of remotes::install_github() in README

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   • Fix Codecov icicle graph: use codecov.io for SVG (not app.codecov.io)

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5. Commits on Mar 9, 2026

   • Remove deprecated function wrappers

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   • Set version to x.0.0

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   • Bump major version

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   • Remove accidentally tracked .DS_Store files

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   • Bump version to 0.99.10; fix R CMD check errors and notes

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6. Commits on Mar 8, 2026

   • Bump version to 0.99.12

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   • Move XGR to Suggests, standardize CI, remove .DS_Store

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7. Commits on Oct 20, 2023

   • update readme

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   • document test_enrichment

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8. Commits on Dec 23, 2022

   • Add rworkflows

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   • Add rworkflows

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9. Commits on Oct 30, 2022

   • update news [skip ci]

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   • Add badget to Suggests. Fix readme

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   • hash out MOTIFBREAKR_plot test

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