Issues

• Request of clarifications about processed data in cpg0019

  cytomining/DeepProfiler#360 · Filter by author jasperhyp opened on Jan 1, 2025
  5

• ValueError: Unexpectedly found an instance of type <class 'keras.src.engine.keras_tensor.KerasTensor'>. Expected a symbolic tensor instance.

  cytomining/DeepProfiler#359 · Filter by author Boom5426 opened on Sep 2, 2024

• DeepProfiler produces incorrect crops if provided with images of different sizes

  cytomining/DeepProfiler#355 · Filter by author goncinious opened on Feb 16, 2024
  1

• What's your thoughts on plate/batch-wise whitening for batch effect?

  cytomining/DeepProfiler#352 · Filter by author hellowangqian opened on Aug 17, 2023
  3

• finetune the model you provided error

  cytomining/DeepProfiler#347 · Filter by author shihanyu opened on Feb 22, 2023
  3

• Speed up profiling

  enhancement
  cytomining/DeepProfiler#325 · Filter by author Arkkienkeli opened on Jun 3, 2022

• Image names for full image crop generator are taken as is

  cytomining/DeepProfiler#322 · Filter by author Arkkienkeli opened on May 31, 2022

• Merge metadata and outlines.

  enhancement
  cytomining/DeepProfiler#318 · Filter by author Arkkienkeli opened on Feb 1, 2022

• Finalize transition to TFv2

  cytomining/DeepProfiler#317 · Filter by author gpovysil opened on Dec 21, 2021
  4

• Old / unwanted commands?

  cytomining/DeepProfiler#316 · Filter by author michaelbornholdt opened on Nov 18, 2021
  2

• Save location files in nested folder structures as well

  cytomining/DeepProfiler#315 · Filter by author michaelbornholdt opened on Nov 17, 2021
  1

• Port individual channel crop generator.

  enhancement
  cytomining/DeepProfiler#313 · Filter by author Arkkienkeli opened on Nov 5, 2021 · Finalize porting to TF2
  

• TFv2 training time issue

  bugenhancement
  cytomining/DeepProfiler#310 · Filter by author Arkkienkeli opened on Nov 2, 2021 · Finalize porting to TF2
  

• Port single image crop generator and profiling to TFv2

  enhancement
  cytomining/DeepProfiler#309 · Filter by author Arkkienkeli opened on Nov 2, 2021 · Finalize porting to TF2
  

• Integrate online labels crop generator into traintf2

  enhancement
  cytomining/DeepProfiler#308 · Filter by author Arkkienkeli opened on Nov 2, 2021 · Finalize porting to TF2
  

• Resume single cells export

  enhancement
  cytomining/DeepProfiler#296 · Filter by author jccaicedo opened on Oct 12, 2021

• Update the wiki

  enhancement
  cytomining/DeepProfiler#289 · Filter by author Arkkienkeli opened on Oct 6, 2021
  3

  

• Parameterize augmentations

  enhancement
  cytomining/DeepProfiler#281 · Filter by author Arkkienkeli opened on Oct 1, 2021
  2

• Build helper functions

  cytomining/DeepProfiler#262 · Filter by author michaelbornholdt opened on Jul 21, 2021
  1

• Reading Location files gives unhelpful error

  cytomining/DeepProfiler#261 · Filter by author michaelbornholdt opened on Jun 30, 2021
  3

• Check coordinates of the boxes during cropping.

  bugenhancement
  cytomining/DeepProfiler#258 · Filter by author Arkkienkeli opened on May 17, 2021
  

• Document how to setup ec2 instance in AWS to run DeepProfiler

  help wantedquestion
  cytomining/DeepProfiler#257 · Filter by author shntnu opened on May 10, 2021
  2

• Performance metrics - report average class accuracy, rather than just accuracy.

  enhancement
  cytomining/DeepProfiler#239 · Filter by author jccaicedo opened on Aug 20, 2020

• Cropping doesn't support multiple targets

  enhancement
  cytomining/DeepProfiler#136 · Filter by author santient opened on Jul 25, 2018
  1

• Parameterize the use of pixel normalization

  enhancement
  cytomining/DeepProfiler#25 · Filter by author jccaicedo opened on Sep 22, 2017