Issues

• pdb and sdf file

  drorlab/atom3d#68 · Filter by author EDAPINENUT opened on Oct 30, 2024

• homology calculation

  drorlab/atom3d#67 · Filter by author huanggewudi opened on Jun 25, 2024

• small bug in atom3d.util.formats.df_to_bps line 111

  drorlab/atom3d#66 · Filter by author YangyangMiao opened on Mar 26, 2024

• it cost long time for atom3d/examples/ppi/gnn /data.py

  drorlab/atom3d#64 · Filter by author bozhenhhu opened on Jul 2, 2023

• atom graph or residue graph for protein

  drorlab/atom3d#63 · Filter by author phdymz opened on Jun 11, 2023

• 'seq' value is ;[]', empty for the LBA dataset

  drorlab/atom3d#62 · Filter by author lzhangUT opened on Feb 10, 2023

• No scripts for cnn3d and gnn for RES

  drorlab/atom3d#61 · Filter by author Samuel-gwb opened on Oct 12, 2022

• Request for data in h5 format

  drorlab/atom3d#60 · Filter by author colormeblue1013 opened on Aug 29, 2022

• Missing download_split_indices()

  drorlab/atom3d#59 · Filter by author cgoliver opened on Aug 26, 2022

• Clarifications in docs for data loading

  drorlab/atom3d#58 · Filter by author cgoliver opened on Aug 26, 2022

• Why models perform worse on the 60% identity split LBA dataset than on the 30% split?

  drorlab/atom3d#57 · Filter by author Gloria-LIU opened on Jul 29, 2022
  1

• What does the edge feature stand for?

  drorlab/atom3d#56 · Filter by author Seojin-Kim opened on Jul 28, 2022
  1

• ModuleNotFoundError

  drorlab/atom3d#55 · Filter by author Catiks opened on Jun 22, 2022
  3

• Severe contradiction over the LBA dataset at 60% identity

  drorlab/atom3d#54 · Filter by author smiles724 opened on Apr 15, 2022

• Questions about the LEP dataset

  drorlab/atom3d#53 · Filter by author smiles724 opened on Apr 14, 2022

• Processing pdb data to get data for 3D CNN

  drorlab/atom3d#51 · Filter by author yuanqidu opened on Mar 8, 2022
  1

• Questions on chain in LEP

  drorlab/atom3d#48 · Filter by author chao1224 opened on Feb 7, 2022

• res dataset source appears to be broken

  drorlab/atom3d#47 · Filter by author njwfish opened on Feb 5, 2022

• PSR dataset improvement

  drorlab/atom3d#46 · Filter by author fmocking opened on Jan 25, 2022

• Question on Data Splitting

  drorlab/atom3d#43 · Filter by author chao1224 opened on Nov 1, 2021
  2

• Trained models available?

  enhancement
  drorlab/atom3d#40 · Filter by author meghana-kshirsagar opened on Sep 13, 2021

• Missing labels in res-del dataset

  drorlab/atom3d#39 · Filter by author meghana-kshirsagar opened on Sep 13, 2021