Updating master with most recent package features by steinnhauser · Pull Request #2 · emma-bailey/mne-python

steinnhauser · 2024-10-23T16:22:42Z

Reference issue

Example: Fixes mne-tools#1234.

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Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>

…12829)

Co-authored-by: Eric Larson <[email protected]> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>

Co-authored-by: Eric Larson <[email protected]>

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Eric Larson <[email protected]>

Co-authored-by: autofix-ci[bot] <114827586+autofix-ci[bot]@users.noreply.github.com>

…lex/phase outputs (#12842)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Eric Larson <[email protected]>

Co-authored-by: Stefan Appelhoff <[email protected]>

Co-authored-by: Clemens Brunner <[email protected]>

…12865)

Co-authored-by: Clemens Brunner <[email protected]>

…ailable (#12862) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Clemens Brunner <[email protected]> Co-authored-by: Eric Larson <[email protected]>

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Mathieu Scheltienne <[email protected]>

…tio (#12868) Co-authored-by: autofix-ci[bot] <114827586+autofix-ci[bot]@users.noreply.github.com> Co-authored-by: Eric Larson <[email protected]> Co-authored-by: Daniel McCloy <[email protected]>

…)` (#12366) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Alex Lepauvre <[email protected]> Co-authored-by: Qian Chu <[email protected]> Co-authored-by: Alex Lepauvre <[email protected]> Co-authored-by: Daniel McCloy <[email protected]> Co-authored-by: Eric Larson <[email protected]>

Co-authored-by: Eric Larson <[email protected]>

Co-authored-by: autofix-ci[bot] <114827586+autofix-ci[bot]@users.noreply.github.com>

Co-authored-by: Eric Larson <[email protected]>

Co-authored-by: Daniel McCloy <[email protected]> Co-authored-by: autofix-ci[bot] <114827586+autofix-ci[bot]@users.noreply.github.com>

Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>

…ect (#12877) Co-authored-by: Daniel McCloy <[email protected]>

) Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

Co-authored-by: autofix-ci[bot] <114827586+autofix-ci[bot]@users.noreply.github.com>

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>

Co-authored-by: autofix-ci[bot] <114827586+autofix-ci[bot]@users.noreply.github.com>

Co-authored-by: autofix-ci[bot] <114827586+autofix-ci[bot]@users.noreply.github.com> Co-authored-by: Daniel McCloy <[email protected]>

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>

steinnhauser · 2024-10-23T16:23:00Z

LGTM! 🍪 No code review necessary

larsoner and others added 30 commits September 2, 2024 20:48

MAINT: Fix for dipy deprecation (#12823)

e221c6c

[pre-commit.ci] pre-commit autoupdate (#12825)

3f1c780

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>

Fix docstring typos (#12826)

013d6c9

Add update to .elc montage reader (#12830)

3ecdd6b

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>

MAINT: No sklearn nightly for now (#12832)

c46733a

[API] Deprecate average parameter from CSP and SPoC plotting methods (#…

c993ae5

…12829)

[DOC] Fix misleading fit_transform docstrings (#12827)

f3a3ca4

Co-authored-by: Eric Larson <[email protected]> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>

Disable unicode symbols in mne.sys_info() on Windows (#12838)

5cd5299

Determine total memory without psutil (#12787)

828953e

hotfix elc reader (#12839)

ebab915

Co-authored-by: Eric Larson <[email protected]>

[pre-commit.ci] pre-commit autoupdate (#12837)

9a2f887

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Eric Larson <[email protected]>

MAINT: Remove BaseEstimator (#12834)

5425ef4

Co-authored-by: autofix-ci[bot] <114827586+autofix-ci[bot]@users.noreply.github.com>

[MRG] Add additional tests for ant reader (#12841)

528e046

MAINT: Improve PR template (#12833)

2f29927

Use SI units for eyetracking data, update tutorials (#12846)

670330a

[BUG] Allow Epochs.compute_tfr() for the multitaper method and comp…

e999e85

…lex/phase outputs (#12842)

[pre-commit.ci] pre-commit autoupdate (#12856)

efbd972

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Eric Larson <[email protected]>

FIX: use meters for pupil SI, not moles (#12850)

4f58e81

Co-authored-by: Stefan Appelhoff <[email protected]>

[BUG] Fix ignored colorbar flag in plot_psds_topomap() (#12853)

2cab025

DOC: Document installer uninstallation (#12845)

efe8b6a

DOC: impedances may be obtained for BrainVision (#12861)

fa841cb

Co-authored-by: Clemens Brunner <[email protected]>

[MAINT] Update minimum Python version to 3.10 in environment.yml (#…

e6f9c5d

…12865)

DOC: ICA -> fix typo, add func ref, use list (#12860)

6f9646f

Co-authored-by: Clemens Brunner <[email protected]>

scale figsize in plot_events depending on n unique events (#12844)

a218f96

Let users run find_bads_muscle also when no sensor positions are av…

b9cdca8

…ailable (#12862) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Clemens Brunner <[email protected]> Co-authored-by: Eric Larson <[email protected]>

FIX: limit ncols to a reasonable max in plot_events (#12867)

fc05aeb

fix HTML repr table rendering (#12788)

dcb05a2

DOC: clean up ECG ICA docstrs (#12866)

ab25168

[pre-commit.ci] pre-commit autoupdate (#12869)

1dd07a4

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Mathieu Scheltienne <[email protected]>

[MRG] Remove impedances in ant reader in favor of an example using an…

d248a57

…tio (#12868) Co-authored-by: autofix-ci[bot] <114827586+autofix-ci[bot]@users.noreply.github.com> Co-authored-by: Eric Larson <[email protected]> Co-authored-by: Daniel McCloy <[email protected]>

qian-chu and others added 25 commits September 24, 2024 10:47

Add toml-sort to sort pyproject.toml (#12870)

50ce70a

Co-authored-by: Eric Larson <[email protected]>

ENH: Add some options for 3D renderer titles (#12871)

381688f

Co-authored-by: autofix-ci[bot] <114827586+autofix-ci[bot]@users.noreply.github.com>

Use Path in raw.filenames and epochs.filename (#12843)

10ff91a

Co-authored-by: Eric Larson <[email protected]>

ENH: Better validation of info and subject_info (#12875)

5492174

Co-authored-by: Daniel McCloy <[email protected]> Co-authored-by: autofix-ci[bot] <114827586+autofix-ci[bot]@users.noreply.github.com>

BUG: Fix bug with Path casting (#12878)

8379668

MAINT: Update code credit (#12880)

717bd1a

Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>

[pre-commit.ci] pre-commit autoupdate (#12879)

099cf60

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>

[MRG] Require good and bad channels when creating a SpectrumArray obj…

7af60e6

…ect (#12877) Co-authored-by: Daniel McCloy <[email protected]>

Update roadmap (#12872)

78ea8b7

MAINT: Linkchecks [circle deploy] (#12882)

7e197c7

make HTML repr for Forward match others (#12883)

ed933b8

Update spacing for comments in pyproject.toml (#12886)

d4c0d1c

Bump mamba-org/setup-micromamba from 1 to 2 in the actions group (#12887

94fc435

) Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

BUG: Fix bugs with coreg (#12884)

bddaad9

Co-authored-by: autofix-ci[bot] <114827586+autofix-ci[bot]@users.noreply.github.com>

[pre-commit.ci] pre-commit autoupdate (#12888)

c0a98ed

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>

Website (#12885)

53f258d

Cast tuple of filenames to list to improve error handling (#12891)

06050bc

remove trailing slash from pybv base URL [ci skip] (#12892)

72faa3c

Sync README dependencies with pyproject.toml (#12890)

922a780

Co-authored-by: autofix-ci[bot] <114827586+autofix-ci[bot]@users.noreply.github.com>

MAINT: Avoid problematic PySide6 (#12902)

f35aa5a

ENH: Improve report usability (#12901)

56e522b

Co-authored-by: autofix-ci[bot] <114827586+autofix-ci[bot]@users.noreply.github.com> Co-authored-by: Daniel McCloy <[email protected]>

[pre-commit.ci] pre-commit autoupdate (#12908)

18c0d44

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>

Fix GDF NumPy >= 2 (#12909)

97f5b9c

Add psd_args to plot_ica_sources and ICA.plot_sources (#12912)

c63da99

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steinnhauser merged commit 38b6b6a into emma-bailey:main Oct 23, 2024

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Updating master with most recent package features - #2

Updating master with most recent package features#2
steinnhauser merged 55 commits into
emma-bailey:mainfrom
mne-tools:main

steinnhauser commented Oct 23, 2024

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steinnhauser commented Oct 23, 2024

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steinnhauser commented Oct 23, 2024

Reference issue

What does this implement/fix?

Additional information

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steinnhauser commented Oct 23, 2024

Uh oh!

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