Issues

• modelize_spot() docstring incorrectly returns Gaussian fit parameters as "in px" instead of "in nm"

  fish-quant/big-fish#97 · Filter by author 24bisquitz opened on Aug 10, 2026

• Any possible future GPU support to accelerate on large-scale images?

  fish-quant/big-fish#96 · Filter by author eliaswound opened on Jan 12, 2026

• Permission Error[WinError 32]

  fish-quant/big-fish#95 · Filter by author bhankoma opened on Mar 5, 2025

• int type not supported anymore in numpy

  fish-quant/big-fish#94 · Filter by author giocard opened on Jan 22, 2025

• Problem with BigFish Array Indexing

  fish-quant/big-fish#93 · Filter by author LR-MVU opened on Oct 17, 2024

• Issue extracting cell information

  fish-quant/big-fish#91 · Filter by author Boehmin opened on Sep 25, 2023

• issue loading pretrained model for unet segmentation

  fish-quant/big-fish#90 · Filter by author Boehmin opened on Sep 22, 2023

• Implementing new spot detection techniques

  enhancementnew features
  fish-quant/big-fish#88 · Filter by author Henley13 opened on Aug 11, 2023
  1

  

• segmentation fault using U-net based model for nuclear segmentation

  fish-quant/big-fish#87 · Filter by author irelamb opened on Jul 20, 2023

• tesorflow-addons dependency

  fish-quant/big-fish#86 · Filter by author irelamb opened on Jul 20, 2023

• Build a docker image

  packaging
  fish-quant/big-fish#85 · Filter by author Henley13 opened on Jul 11, 2023

• Switch entirely from setup.py to pyproject.toml

  packaging
  fish-quant/big-fish#84 · Filter by author Henley13 opened on Jul 10, 2023

• ModuleNotFoundError on installation

  fish-quant/big-fish#82 · Filter by author binyaminZ opened on Apr 4, 2023
  3

  

• Is there a way outside of visual inspection to set threshold value for watershed segementation?

  stale
  fish-quant/big-fish#72 · Filter by author buttf7 opened on May 31, 2022
  1

• Clarify external and internal cell coordinates

  enhancement
  fish-quant/big-fish#68 · Filter by author Henley13 opened on Apr 7, 2022
  

• Plot elbow, return threshold`

  stale
  fish-quant/big-fish#56 · Filter by author SachinDavis opened on Aug 19, 2021
  1

• Set spot detection threshold based on signal:background

  stale
  fish-quant/big-fish#46 · Filter by author jstitlow opened on Mar 17, 2021
  1

• Increase speed of spot detection

  stale
  fish-quant/big-fish#44 · Filter by author jstitlow opened on Mar 17, 2021
  1