Maintenance release

Full Changelog: SNT-5.0.19...SNT-5.0.20

New

• Demo Datasets now include guided tutorial

Improved

• Curation assistant produces Issues heatmap, and summary report
• Curation assistant controls, with next/previous stepper, option to discard/ignore issues of the same type
  Materialization: Implement center of scene option

Fixed

• Mixed issues

Full Changelog: SNT-5.0.18...SNT-5.0.19

New

• Options for creating seeds during the tracing session
• In stream mode press spacebar to toggle between tracing and navigation. Hold spacebar down to temporarily switch to navigation, then release to resume tracing
• Option to extend existing paths in stream mode
• Colorblind-safe palette for charts and path tagging

Improved

• Highlighting of selected path(s) in stream mode
• G and Shift+G shortcuts now work in stream mode
• Granular control over annotations visibility in stream mode. It is now possible to hide paths, markers, or seeds in any combination
• Auto-correct orphaned fitted paths on save
• Extend rebuild command to detect orphaned fitted paths
• Options to scale properties of bookmarks/seeds
• Seeds can now be used in stream mode
• Improve confidence mapping of seeds using percentiles
• Options to select seeds based on their association to traced paths
• API: Allow seeds to be loaded from CSV files
• Updated SKILL.md

Fixed

• Sholl on selected paths not working
• Soma detectors returning duplicated hits within min. radius distance
• Synchronization of pause SNT/pause tracing state in stream mode
• Missing root handles in Path Manager
• Selection of orphaned fitted paths
• Concurrency exception on annotation overlay

Full Changelog: SNT-5.0.17...SNT-5.0.18

Fixed

• Several fixes for SNT Stream functions including a EDT deadlock on startup

Full Changelog: SNT-5.0.16...SNT-5.0.17

New

• Onboarding tour when first starting SNT
• Materialize_Multichannel_Region template script

Improved

• Commands that were disabled in Stream mode are now functional with streamed data (Roi converters, Path profilers, Show only selected structure option in Path Manager, etc.)
• Network detection when streaming data
• Faster searches in Command Palette; script search is now triggered by $
• Faster computation of histograms for large distributions
• About dialog lists more useful details
• Cache can now be cleared from the Other Options... dialog
• Measure... dialog: Minor performance and stability improvements
• Non-urgent warnings are now displayed in the notifications menu of the status bar

Fixed

• Several fixes for SNT Stream functions, including path detectors outputting locations with wrong offsets
• GWDTTracer preferences not persisting across runs
• Slow query searches in Path Manager and Ontology Browser
• Misc issues

Full Changelog: SNT-5.0.15...SNT-5.0.16

Improved

• Paths can now be edited in materialized crops in SNT Stream
• Implement UX controls for Ctrl+Scroll adjustment of diameters

Fixed

• Several improvements/fixes on SNT Stream functions

Full Changelog: SNT-5.0.14...SNT-5.0.15

Improved

• Stream mode:
  • Tracing wizards, secondary layer tracing, and zoom controls now work with big-data
  • Better detection of n5/zarr paths/URLs and better handling of non-pyramidal files
• Streamlined auto-tracing for large pyramidal files
• Better grouping of bookmarks/markers
• New user preference to enable native file choosers in Open/Save dialogs
• Sholl from tracings: Resolved center is now highlighted
• Updated dependencies

Fixed

• Cursor auto-snapping ignoring secondary layer choice
• Timelapse sequences not loading in BDV/BVV
• Background commands persisting after exiting stream mode
• Angle calculation errors on 2-node paths
• Auto-tracing exceptions in stream mode
• Handling of pyramidal files with non-zero origin

Full Changelog: SNT-5.0.13...SNT-5.0.14

New

• Preliminary release of SNT Stream with BDV and BVV support
• Retrace command

Improved

• Command Palette with fuzzy search
• Combination of selection filters in Path Manager
• Several UX optimizations

Full Changelog: SNT-5.0.12...SNT-5.0.13

New

• Intensity profiles over time, (e.g., for monitoring calcium dynamics along neurites; forum post)
• Support for BDV
• Curation assistant now lists impact scores, and criteria distributions
• Big Data: Implement NodeColector

Improved

• Delineations export to labels image
• Improved navigation toolbar, and "ZoomTo" navigation
• Markers table in Bvv/Bdv is now interactive
• Allow bookmarks to be sorted by position
• Several UX controls re-organized/modernized
• TreeToRaster: Lower memory consumption w/ MIP option and radius scaling

Fixed

• Inability to grab nearest path to cursor when all paths selected
• Fix zero values on first and last nodes on path profiles w/ shape line
• Inaccuracy of point selection in BVV
• Scene resetting when toggling slab view in BVV
• Bookmark highlighting
• Fix exception when loading multi-channel IMS files

Full Changelog: SNT-5.0.11...SNT-5.0.12

New

• Seeded Tracing
• Cost Function Selection Wizard
• Ready-to-use system-prompt file for agentic scripting

Fixed

• Misc fixes

Full Changelog: SNT-5.0.10...SNT-5.0.11