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setup-r-dependencies should match the lockfile exactly, by removing packages, if needed #550
Description
Activity
This needs an update in pak/pkgdepends.
Maybe this bug?
But
pakis not very useful:! Could not solve package dependencies: * deps::.: Can't install dependency testthat (>= 3.0.0) * testthat: * Can't install dependency cli (>= 3.6.1) (>= 1.0.1) (>= 1.7.5) * Can't install dependency evaluate (>= 1.0.1) (>= 1.7.5) * Can't install dependency ps (>= 1.7.5) * cli: cli conflicts with cli, to be installed * evaluate: evaluate conflicts with evaluate, to be installed * ps: ps conflicts with ps, to be installed * any::sessioninfo: dependency conflict * any::remotes: dependency conflict * any::rcmdcheck: dependency conflict * any::spelling: dependency conflictaction log
2025-07-13T16:40:23.5233007Z ##[group]Run # Dependency resolution 2025-07-13T16:40:23.5233272Z �[36;1m# Dependency resolution�[0m 2025-07-13T16:40:23.5233504Z �[36;1mcat("::group::Dependency resolution\n")�[0m 2025-07-13T16:40:23.5250329Z �[36;1mcat("os-version=", sessionInfo()$running, "\n", file = Sys.getenv("GITHUB_OUTPUT"), sep = "", append = TRUE)�[0m 2025-07-13T16:40:23.5251080Z �[36;1mr_version <-�[0m 2025-07-13T16:40:23.5251452Z �[36;1m if (grepl("development", R.version.string)) {�[0m 2025-07-13T16:40:23.5251908Z �[36;1m pdf(tempfile())�[0m 2025-07-13T16:40:23.5252340Z �[36;1m ge_ver <- attr(recordPlot(), "engineVersion")�[0m 2025-07-13T16:40:23.5252780Z �[36;1m dev.off()�[0m 2025-07-13T16:40:23.5253343Z �[36;1m paste0("R version ", getRversion(), " (ge:", ge_ver, "; iid:", .Internal(internalsID()), ")")�[0m 2025-07-13T16:40:23.5253976Z �[36;1m } else {�[0m 2025-07-13T16:40:23.5254282Z �[36;1m R.version.string�[0m 2025-07-13T16:40:23.5254601Z �[36;1m }�[0m 2025-07-13T16:40:23.5255119Z �[36;1mcat("r-version=", r_version, "\n", file = Sys.getenv("GITHUB_OUTPUT"), sep = "", append = TRUE)�[0m 2025-07-13T16:40:23.5255971Z �[36;1mneeds <- sprintf("Config/Needs/%s", strsplit("check", "[[:space:],]+")[[1]])�[0m 2025-07-13T16:40:23.5256630Z �[36;1mif (length(needs) == 0L) needs <- NULL�[0m 2025-07-13T16:40:23.5257203Z �[36;1mdeps <- strsplit("deps::., any::sessioninfo", "[[:space:],]+")[[1]]�[0m 2025-07-13T16:40:23.5258046Z �[36;1mextra_deps <- strsplit("any::remotes, any::rcmdcheck, any::spelling", "[[:space:],]+")[[1]]�[0m 2025-07-13T16:40:23.5258782Z �[36;1mdir.create(".github", showWarnings=FALSE)�[0m 2025-07-13T16:40:23.5259294Z �[36;1mSys.setenv("PKGCACHE_HTTP_VERSION" = "2")�[0m 2025-07-13T16:40:23.5259836Z �[36;1mlibrary(pak, lib.loc = Sys.getenv("R_LIB_FOR_PAK"))�[0m 2025-07-13T16:40:23.5260325Z �[36;1mpak::lockfile_create(�[0m 2025-07-13T16:40:23.5260671Z �[36;1m c(deps, extra_deps),�[0m 2025-07-13T16:40:23.5261060Z �[36;1m lockfile = ".github/pkg.lock",�[0m 2025-07-13T16:40:23.5261463Z �[36;1m upgrade = (FALSE),�[0m 2025-07-13T16:40:23.5261824Z �[36;1m dependencies = c(needs, ("all")),�[0m 2025-07-13T16:40:23.5262225Z �[36;1m lib = NULL�[0m 2025-07-13T16:40:23.5262497Z �[36;1m)�[0m 2<details><summary>Toggle me!</summary>025-07-13T16:40:23.5262754Z �[36;1mcat("::endgroup::\n")�[0m 2025-07-13T16:40:23.5263116Z �[36;1mcat("::group::Show Lockfile\n")�[0m 2025-07-13T16:40:23.5263854Z �[36;1mwriteLines(readLines(".github/pkg.lock"))�[0m 2025-07-13T16:40:23.5264292Z �[36;1mcat("::endgroup::\n")�[0m 2025-07-13T16:40:23.5270156Z shell: C:\R\bin\Rscript.EXE {0} 2025-07-13T16:40:23.5270504Z env: 2025-07-13T16:40:23.5270994Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2025-07-13T16:40:23.5271425Z _R_CHECK_FORCE_SUGGESTS_: false 2025-07-13T16:40:23.5271797Z _R_CHECK_CRAN_INCOMING_REMOTE_: false 2025-07-13T16:40:23.5272412Z GITHUB_PAT: *** 2025-07-13T16:40:23.5272707Z MAKEFLAGS: -j 2 2025-07-13T16:40:23.5272989Z _R_INSTALL_TIME_PATCHES_: no 2025-07-13T16:40:23.5273331Z R_LIBS_USER: D:\a\_temp\Library 2025-07-13T16:40:23.5273653Z TZ: UTC 2025-07-13T16:40:23.5273905Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2025-07-13T16:40:23.5274220Z NOT_CRAN: true 2025-07-13T16:40:23.5274592Z RSPM: https://packagemanager.posit.co/cran/latest 2025-07-13T16:40:23.5275246Z RENV_CONFIG_REPOS_OVERRIDE: https://packagemanager.posit.co/cran/latest 2025-07-13T16:40:23.5275845Z R_LIBS_SITE: C:/R/site-library 2025-07-13T16:40:23.5276227Z R_LIB_FOR_PAK: C:/R/site-library 2025-07-13T16:40:23.5276575Z ##[endgroup] 2025-07-13T16:40:23.6763698Z ##[group]Dependency resolution 2025-07-13T16:40:24.7238032Z i Creating lockfile '.github/pkg.lock' 2025-07-13T16:40:25.0892871Z 2025-07-13T16:40:26.3755230Z v Updated metadata database: 6.94 MB in 17 files. 2025-07-13T16:40:26.3763063Z 2025-07-13T16:40:26.3980399Z i Creating lockfile '.github/pkg.lock' 2025-07-13T16:40:26.3981248Z i Updating metadata database 2025-07-13T16:40:42.9982489Z v Updating metadata database ... done 2025-07-13T16:40:42.9990634Z 2025-07-13T16:40:45.7843611Z i Creating lockfile '.github/pkg.lock' 2025-07-13T16:40:45.7844237Z x Creating lockfile '.github/pkg.lock' [21s] 2025-07-13T16:40:45.7851709Z 2025-07-13T16:40:47.2946091Z Error: 2025-07-13T16:40:47.2946515Z ! error in pak subprocess 2025-07-13T16:40:47.2947409Z Caused by error: 2025-07-13T16:40:47.2947789Z ! Could not solve package dependencies: 2025-07-13T16:40:47.2948542Z * deps::.: Can't install dependency testthat (>= 3.0.0) 2025-07-13T16:40:47.2950021Z * testthat: 2025-07-13T16:40:47.2950472Z * Can't install dependency cli (>= 3.6.1) (>= 1.0.1) (>= 1.7.5) 2025-07-13T16:40:47.2951543Z * Can't install dependency evaluate (>= 1.0.1) (>= 1.7.5) 2025-07-13T16:40:47.2953021Z * Can't install dependency ps (>= 1.7.5) 2025-07-13T16:40:47.2953522Z * cli: cli conflicts with cli, to be installed 2025-07-13T16:40:47.2954163Z * evaluate: evaluate conflicts with evaluate, to be installed 2025-07-13T16:40:47.2954690Z * ps: ps conflicts with ps, to be installed 2025-07-13T16:40:47.2955199Z * any::sessioninfo: dependency conflict 2025-07-13T16:40:47.2955624Z * any::remotes: dependency conflict 2025-07-13T16:40:47.2956024Z * any::rcmdcheck: dependency conflict 2025-07-13T16:40:47.2956421Z * any::spelling: dependency conflict 2025-07-13T16:40:47.2956725Z --- 2025-07-13T16:40:47.2956949Z Backtrace: 2025-07-13T16:40:47.2957464Z 1. pak::lockfile_create(c(deps, extra_deps), lockfile = ".github/pkg.lock",... 2025-07-13T16:40:47.2958084Z 2. pak:::remote(function(...) { ... 2025-07-13T16:40:47.2958405Z 3. err$throw(res$error) 2025-07-13T16:40:47.2958653Z --- 2025-07-13T16:40:47.2958897Z Subprocess backtrace: 2025-07-13T16:40:47.2959377Z 1. base::withCallingHandlers(cli_message = function(msg) { ... 2025-07-13T16:40:47.2960012Z 2. get("lockfile_create_internal", asNamespace("pak"))(...) 2025-07-13T16:40:47.2960492Z 3. prop$stop_for_solution_error() 2025-07-13T16:40:47.2960880Z 4. private$plan$stop_for_solve_error() 2025-07-13T16:40:47.2961404Z 5. pkgdepends:::pkgplan_stop_for_solve_error(self, private) 2025-07-13T16:40:47.2962091Z 6. base::throw(new_error("Could not solve package dependencies:\n", msg, ... 2025-07-13T16:40:47.2962648Z 7. | base::signalCondition(cond) 2025-07-13T16:40:47.2963002Z 8. global (function (e) ... 2025-07-13T16:40:47.2963310Z Execution halted 2025-07-13T16:40:47.3693761Z ##[error]Process completed with exit code 1.
The extra packages may cause problems.