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Properly handle coverage configuration files #221

Description

@nathanjmcdougall

Motivation
Similar to #185 and #219, we should handle the different coverage configuration files. A pre-requisite is #220.

See here for documentation on the different files:
https://coverage.readthedocs.io/en/latest/config.html#configuration-reference

Summary of desired enhancement
Handle all different coverage configuration files, not just pyproject.toml.

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