bioinformatics – quantixed

My Domain: proteome-wide scanning of TMDs

I wanted to know: After a little bit of searching, I couldn’t find any answers. So I decided to use R to retrieve the necessary info from Uniprot and calculate it myself. I thought I’d post it here in case it’s useful for others. Human We’ll start with the info I wanted. According to Uniprot […]

16th April 2026By Stephen Royle science bioinformatics, cell biology, proteins, Rstats, Uniprot

Tips from the Blog XVI: getting FASTA sequences

I am having some fun running AlphaPulldown on a computing cluster. A requirement is to have input sequences in FASTA format. I found that I needed to get ~600 sequences. I had a list of the relevant Uniprot IDs. Surely getting the sequences for these proteins should be straightforward? Solution The Uniprot IDs can be […]

4th January 2024By Stephen Royle adventures in code, computing, science bioinformatics, tftb