When I run the tests with an external pytest 3.0.5, I get many errors in the doctests:
$ fgrep FAILED ../python-astropy_1.3-3_amd64.build
../docs/known_issues.rst::known_issues.rst FAILED
../docs/warnings.rst::warnings.rst FAILED
../docs/analytic_functions/index.rst::index.rst FAILED
../docs/config/index.rst::index.rst FAILED
../docs/constants/index.rst::index.rst FAILED
../docs/coordinates/angles.rst::angles.rst FAILED
../docs/coordinates/frames.rst::frames.rst FAILED
../docs/coordinates/index.rst::index.rst FAILED
../docs/coordinates/inplace.rst::inplace.rst FAILED
../docs/coordinates/remote_methods.rst::remote_methods.rst FAILED
../docs/coordinates/representations.rst::representations.rst FAILED
../docs/coordinates/skycoord.rst::skycoord.rst FAILED
../docs/coordinates/solarsystem.rst::solarsystem.rst FAILED
../docs/coordinates/transforming.rst::transforming.rst FAILED
../docs/cosmology/index.rst::index.rst FAILED
../docs/development/codeguide.rst::codeguide.rst FAILED
../docs/development/docrules.rst::docrules.rst FAILED
FAILED
../docs/io/unified.rst::unified.rst FAILED
../docs/io/ascii/fixed_width_gallery.rst::fixed_width_gallery.rst FAILED
../docs/io/ascii/index.rst::index.rst FAILED
../docs/io/ascii/read.rst::read.rst FAILED
../docs/io/fits/index.rst::index.rst FAILED
../docs/io/fits/appendix/faq.rst::faq.rst FAILED
../docs/io/fits/appendix/header_transition.rst::header_transition.rst FAILED
../docs/io/fits/appendix/history.rst::history.rst FAILED
../docs/io/fits/usage/headers.rst::headers.rst FAILED
../docs/io/fits/usage/image.rst::image.rst FAILED
../docs/io/fits/usage/table.rst::table.rst FAILED
../docs/io/fits/usage/unfamiliar.rst::unfamiliar.rst FAILED
../docs/io/fits/usage/verification.rst::verification.rst FAILED
../docs/io/votable/index.rst::index.rst FAILED
../docs/modeling/compound-models.rst::compound-models.rst FAILED
../docs/modeling/fitting.rst::fitting.rst FAILED
../docs/modeling/index.rst::index.rst FAILED
../docs/modeling/models.rst::models.rst FAILED
../docs/modeling/parameters.rst::parameters.rst FAILED
../docs/nddata/nddata.rst::nddata.rst FAILED
../docs/nddata/utils.rst::utils.rst FAILED
../docs/table/access_table.rst::access_table.rst FAILED
../docs/table/construct_table.rst::construct_table.rst FAILED
../docs/table/index.rst::index.rst FAILED
../docs/table/indexing.rst::indexing.rst FAILED
../docs/table/io.rst::io.rst FAILED
../docs/table/masking.rst::masking.rst FAILED
../docs/table/mixin_columns.rst::mixin_columns.rst FAILED
../docs/table/modify_table.rst::modify_table.rst FAILED
../docs/table/operations.rst::operations.rst FAILED
../docs/table/pandas.rst::pandas.rst FAILED
../docs/time/index.rst::index.rst FAILED
../docs/units/decomposing_and_composing.rst::decomposing_and_composing.rst FAILED
../docs/units/equivalencies.rst::equivalencies.rst FAILED
../docs/units/format.rst::format.rst FAILED
../docs/units/index.rst::index.rst FAILED
../docs/units/logarithmic_units.rst::logarithmic_units.rst FAILED
../docs/units/quantity.rst::quantity.rst FAILED
../docs/units/standard_units.rst::standard_units.rst FAILED
../docs/visualization/normalization.rst::normalization.rst FAILED
../docs/vo/conesearch/client.rst::client.rst FAILED
../docs/vo/conesearch/index.rst::index.rst FAILED
../docs/vo/conesearch/validator.rst::validator.rst FAILED
../docs/vo/samp/example_clients.rst::example_clients.rst FAILED
../docs/vo/samp/example_hub.rst::example_hub.rst FAILED
../docs/vo/samp/example_table_image.rst::example_table_image.rst FAILED
../docs/wcs/index.rst::index.rst FAILED
../docs/wcs/note_sip.rst::note_sip.rst FAILED
../docs/whatsnew/0.4.rst::0.4.rst FAILED
../docs/whatsnew/1.0.rst::1.0.rst FAILED
../docs/whatsnew/1.1.rst::1.1.rst FAILED
../docs/whatsnew/1.3.rst::1.3.rst FAILED
There seem to be several causes: sometimes pytest detects differences where they are none:
_________________________ [doctest] standard_units.rst _________________________
028 `~astropy.units.CompositeUnit`. In most cases, one does not need
029 to worry about the various kinds of unit classes unless one wants to
030 design a more complex case.
031
032 There are many units already predefined in the module. One may use the
033 `~astropy.units.core.UnitBase.find_equivalent_units` method to list
034 all the existing predefined units of a given type::
035
036 >>> from astropy import units as u
037 >>> u.g.find_equivalent_units()
Differences (unified diff with -expected +actual):
@@ -1,3 +1,3 @@
- Primary name | Unit definition | Aliases
+ Primary name | Unit definition | Aliases
[
M_e | 9.10938e-31 kg | ,
/tmp/astropy-test-FtSQid/docs/units/standard_units.rst:37: DocTestFailure
Sometimes the tests fail because of unavailable modules (they are unavaliable, but don't let the tests fail with the builtin version):
______________________________ [doctest] 1.1.rst _______________________________
135 :meth:`~astropy.table.Table.from_pandas`.
136
137 To demonstrate these, we can create a simple table which we convert to a
138 pandas `DataFrame`_::
139
140 >>> from astropy.table import Table
141 >>> t = Table()
142 >>> t['a'] = [1, 2, 3, 4]
143 >>> t['b'] = ['a', 'b', 'c', 'd']
144 >>> df = t.to_pandas()
UNEXPECTED EXCEPTION: ImportError('No module named pandas',)
Traceback (most recent call last):
File "/usr/lib/python2.7/doctest.py", line 1315, in __run
compileflags, 1) in test.globs
File "<doctest 1.1.rst[4]>", line 1, in <module>
File "astropy/table/table.py", line 2584, in to_pandas
from pandas import DataFrame
ImportError: No module named pandas
/tmp/astropy-test-FtSQid/docs/whatsnew/1.1.rst:144: UnexpectedException
sometimes they try to connect with the outside world:
_____________________________ [doctest] index.rst ______________________________
058 ---------------
059
060 This section only contains minimal examples showing how to perform
061 basic Cone Search.
062
063 >>> from astropy.vo.client import conesearch
064
065 List the available Cone Search catalogs:
066
067 >>> conesearch.list_catalogs()
UNEXPECTED EXCEPTION: URLError(error(111, 'Connection refused'),)
Traceback (most recent call last):
File "/usr/lib/python2.7/doctest.py", line 1315, in __run
compileflags, 1) in test.globs
File "<doctest index.rst[1]>", line 1, in <module>
File "astropy/vo/client/conesearch.py", line 321, in list_catalogs
return vos_catalog.list_catalogs(conf.conesearch_dbname, **kwargs)
[...]
File "astropy/utils/data.py", line 197, in get_readable_fileobj
timeout=remote_timeout)
File "astropy/utils/data.py", line 1097, in download_file
raise e
URLError: <urlopen error [Errno 111] Connection refused>
/tmp/astropy-test-FtSQid/docs/vo/conesearch/index.rst:67: UnexpectedException
sometimes a calculation goes wrong:
______________________________ [doctest] 1.0.rst _______________________________
056 coordinates. This means `~astropy.coordinates` can now be used for planning
057 observations. For example::
058
059 >>> from astropy import units as u
060 >>> from astropy.time import Time
061 >>> from astropy.coordinates import SkyCoord, EarthLocation, AltAz
062 >>> greenwich = EarthLocation(lat=51.477*u.deg,lon=0*u.deg)
063 >>> albireo = SkyCoord('19h30m43.2805s +27d57m34.8483s')
064 >>> altaz = albireo.transform_to(AltAz(location=greenwich, obstime=Time('2014-6-21 0:00')))
065 >>> print altaz.alt, altaz.az
Expected:
60d32m28.4576s 133d45m36.4967s
Got:
60d32m28.4579s 133d45m36.4967s
and there are many other problems as well. Looks like some compatibility problem?
I have no history for this problem, since by mistake we currently use the built-in pytest. This however fails with astroplan.
Any ideas?
When I run the tests with an external pytest 3.0.5, I get many errors in the doctests:
There seem to be several causes: sometimes pytest detects differences where they are none:
Sometimes the tests fail because of unavailable modules (they are unavaliable, but don't let the tests fail with the builtin version):
sometimes they try to connect with the outside world:
sometimes a calculation goes wrong:
and there are many other problems as well. Looks like some compatibility problem?
I have no history for this problem, since by mistake we currently use the built-in pytest. This however fails with astroplan.
Any ideas?