ENH: Add optional channel name overlay to plot_alignment by aman-coder03 · Pull Request #13570 · mne-tools/mne-python

aman-coder03 · 2025-12-30T07:36:50Z

What does this PR do?

adds an optional show_channel_names parameter to plot_alignment to overlay channel labels at sensor locations in the 3D alignment view.

Why?

this improves interpretability when inspecting sensor alignment, especially for debugging, teaching, and demonstrations. The feature is fully opt-in and does not change default behavior.

Backward compatibility

fully backward compatible (disabled by default).

Tests

visualization tests pass (dataset-dependent tests skipped as expected).

fixes #13502

drammock · 2026-01-02T15:55:14Z

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Suggested change

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drammock · 2026-01-02T15:57:24Z

@aman-coder03 please also look at our tutorials or examples that use plot_alignment, find one where it wouldn't be distracting to include the sensor names, and change the tutorial to use this new parameter. That way we can see how it looks in the built documentation

aman-coder03 · 2026-01-02T16:32:30Z

thanks for your suggestion @drammock
I have updated the changes, happy to adjust the example if you prefer a different one.

1himan · 2026-01-14T10:38:37Z

Hey @aman-coder03, for describing your changes in the changelog you might wanna read this.

Also you can ping me if you need any sort of help.

for more information, see https://pre-commit.ci

drammock · 2026-02-12T15:43:58Z

https://app.circleci.com/pipelines/github/mne-tools/mne-python/30108/workflows/d057c473-bbc5-44c6-8c59-bfc4c75c5932/jobs/79016?invite=true#step-143-128_128 says:

WARNING: Docstring 'mne.viz.plot_alignment' is missing a blank line before the directive ' .. versionadded::' on line 188

The windows pip-pre failure is being tracked upstream here: statsmodels/statsmodels#9748 and we already have a work-around in #13632 so let's merge in main after addressing the doc build problem.

drammock

render looks good! https://output.circle-artifacts.com/output/job/eba2b2fd-3b82-43bd-a8d3-72eaafebe201/artifacts/0/html/auto_examples/visualization/eeg_on_scalp.html

Just a couple nitpicks.

welcome · 2026-02-12T17:58:40Z

🎉 Congrats on merging your first pull request! 🥳 Looking forward to seeing more from you in the future! 💪

aman-coder03 · 2026-02-12T18:03:36Z

thankyouu very much @drammock for your support and guidance!!
looking forward to contribute more!!

…3570) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Daniel McCloy <[email protected]>

* [pre-commit.ci] pre-commit autoupdate (mne-tools#13646) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: mne[bot] <[email protected]> * Fix and extend anonymize_info (mne-tools#13647) * Fix epochs.plot() scrollbar issue (mne-tools#13654) * ENH: Add optional channel name overlay to plot_alignment (mne-tools#13570) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Daniel McCloy <[email protected]> * Fix docstrings for get_data() (mne-tools#13652) * DOC: Add detail to make_watershed_bem volume parameter (mne-tools#13658) * [pre-commit.ci] pre-commit autoupdate (mne-tools#13663) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: mne[bot] <[email protected]> * update maintainers lists (mne-tools#13631) * Fixes make_scalp_surfaces (mne-tools#13024) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Marijn van Vliet <[email protected]> Co-authored-by: Eric Larson <[email protected]> * DOC: Add pybvrf [skip azp] [skip actions] (mne-tools#13665) * Expose bem submodule (mne-tools#13669) * Rename `Epochs.reset_drop_log_selection()` to `Epochs.reset_index()` (mne-tools#13675) * MAINT: Work around NumPy deprecation (mne-tools#13677) * [pre-commit.ci] pre-commit autoupdate (mne-tools#13678) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: mne[bot] <[email protected]> * Allow reading alternative nasion label (Nz) from snirf file (mne-tools#13672) Co-authored-by: Daniel McCloy <[email protected]> * use a lockfile for "old" CI job (mne-tools#13490) Co-authored-by: Carina Forster <[email protected]> Co-authored-by: Thomas S. 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Binns <[email protected]> Co-authored-by: Daniel McCloy <[email protected]> * ENH: support per-vertex opacity in 3D overlays (mne-tools#13706) Co-authored-by: Eric Larson <[email protected]> * FIX: Spelling [ci skip] * Fix generation of lockfile for old job (mne-tools#13724) * eyetrack should not count as picks=data (mne-tools#13723) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Scott Huberty <[email protected]> * BUG: prevent NaNs in layered overlay compositing when resulting alpha is zero (mne-tools#13714) Co-authored-by: Marijn van Vliet <[email protected]> * Added HEDAnnotations (mne-tools#13059) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Daniel McCloy <[email protected]> Co-authored-by: Bru <[email protected]> Co-authored-by: Stefan Appelhoff <[email protected]> * [dependabot]: Bump the actions group with 2 updates (mne-tools#13728) Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: mne[bot] <[email protected]> Co-authored-by: Eric Larson <[email protected]> * [pre-commit.ci] pre-commit autoupdate (mne-tools#13734) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: mne[bot] <[email protected]> Co-authored-by: Eric Larson <[email protected]> * Raising meaningful warnings/errors for interpolate_bads, when supplie… (mne-tools#13518) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * BUG: Fix bug with default (mne-tools#13744) * DOC: document first_samp behavior after crop and RawArray workaround (mne-tools#13685) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * FIX: do not print dev_head_t if not available (mne-tools#13741) Co-authored-by: Eric Larson <[email protected]> * FIX: Link [ci skip] * Update name [ci skip] * MAINT: cleanup Python 3.9 compat from __future__ import annotations (mne-tools#13749) Co-authored-by: Marijn van Vliet <[email protected]> * FIX: Handle hidden annotations during deletion in mpl plot (mne-tools#13703) * ENH: Log scaling better (mne-tools#13758) * [pre-commit.ci] pre-commit autoupdate (mne-tools#13762) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: mne[bot] <[email protected]> Co-authored-by: Eric Larson <[email protected]> * FORWARD: assert invariant for unreachable rref branch in _lead_dots (mne-tools#13764) * Improve handling of dropped epochs in ica.plot_properties (mne-tools#13746) * Support mixed hed annotations, concat and solve version registration (mne-tools#13736) * ENH: compute CSD directly for upper-triangle channel pairs in Fourier/multitaper (mne-tools#13719) * Extend plot_csd support to SEEG, ECoG, and DBS channel types (mne-tools#13713) Co-authored-by: Thomas S. 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(mne-tools#13813) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Erica R Peterson <[email protected]> * MAINT: Update dependency specifiers (mne-tools#13899) Co-authored-by: autofix-ci[bot] <114827586+autofix-ci[bot]@users.noreply.github.com> Co-authored-by: Eric Larson <[email protected]> * [dependabot]: Bump github/codeql-action from 4.35.3 to 4.35.4 in the actions group (mne-tools#13901) Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: mne[bot] <[email protected]> * [pre-commit.ci] pre-commit autoupdate (mne-tools#13902) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: mne[bot] <[email protected]> * MAINT: Remove workaround for old PySide6 (mne-tools#13900) * Add spherical montages (mne-tools#13903) * [dependabot]: Bump the actions group with 2 updates (mne-tools#13918) Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: mne[bot] <[email protected]> * [pre-commit.ci] pre-commit autoupdate (mne-tools#13919) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: mne[bot] <[email protected]> * MAINT: Update dependency specifiers (mne-tools#13916) Co-authored-by: autofix-ci[bot] <114827586+autofix-ci[bot]@users.noreply.github.com> Co-authored-by: Eric Larson <[email protected]> * BUG: set_eeg_reference list ch_type now applies per-type CAR by default (mne-tools#13920) * FIX: Avoid iteration errors caused by None when reading Nihon Kohden .LOG files (mne-tools#13915) * Fix drop_log dtype (mne-tools#13923) * Doc: add guidance on taking over a stale pull request (mne-tools#13877) Co-authored-by: Thomas S. Binns <[email protected]> Co-authored-by: Daniel McCloy <[email protected]> * FIX: Make set_eeg_reference working with a string for a channel name (mne-tools#13917) --------- Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: mne[bot] <[email protected]> Co-authored-by: Clemens Brunner <[email protected]> Co-authored-by: Aman Srivastava <[email protected]> Co-authored-by: Daniel McCloy <[email protected]> Co-authored-by: Himanshu Mahor <[email protected]> Co-authored-by: Scott Huberty <[email protected]> Co-authored-by: Victor Férat <[email protected]> Co-authored-by: Marijn van Vliet <[email protected]> Co-authored-by: Eric Larson <[email protected]> Co-authored-by: Aniket <[email protected]> Co-authored-by: Carina Forster <[email protected]> Co-authored-by: Thomas S. Binns <[email protected]> Co-authored-by: Erica Peterson <[email protected]> Co-authored-by: Horizon_Architect_07 <[email protected]> Co-authored-by: Pragnya <[email protected]> Co-authored-by: Benedikt Ehinger <[email protected]> Co-authored-by: Kay Robbins <[email protected]> Co-authored-by: Bru <[email protected]> Co-authored-by: Stefan Appelhoff <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Johannes Herforth <[email protected]> Co-authored-by: Hansuja <[email protected]> Co-authored-by: Simon Kern <[email protected]> Co-authored-by: autofix-ci[bot] <114827586+autofix-ci[bot]@users.noreply.github.com> Co-authored-by: Akhilesh <[email protected]> Co-authored-by: CHH <[email protected]> Co-authored-by: Teon L Brooks <[email protected]> Co-authored-by: Lifeng <[email protected]> Co-authored-by: Kalle Mäkelä <[email protected]> Co-authored-by: Copilot <[email protected]> Co-authored-by: Pavel Popov <[email protected]> Co-authored-by: Ayushi Satodiya <[email protected]> Co-authored-by: Seth Bashford <[email protected]> Co-authored-by: Baris <[email protected]> Co-authored-by: Claude Sonnet 4.6 <[email protected]> Co-authored-by: Jonas Mago <[email protected]> Co-authored-by: Bhargav Kowshik <[email protected]> Co-authored-by: Erica R Peterson <[email protected]> Co-authored-by: Ben Tang <[email protected]> Co-authored-by: myd7349 <[email protected]> Co-authored-by: Michael Straube <[email protected]>

aman-coder03 requested review from agramfort, dengemann, drammock and larsoner as code owners December 30, 2025 07:36

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ENH: Add optional channel name overlay to plot_alignment

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DOC: enchance towncrier and implement show_channel_names in example

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DOC: fix towncrier entry for plot_alignment feature

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DOC: fix towncrier role for PR reference

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drammock merged commit 4a5479d into mne-tools:main Feb 12, 2026
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scott-huberty mentioned this pull request Mar 20, 2026

plot_alignment channel name rendering #13772

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aman-coder03 mentioned this pull request Mar 21, 2026

FIX: Improve channel name rendering in plot_alignment #13773

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ENH: Add optional channel name overlay to plot_alignment - #13570

ENH: Add optional channel name overlay to plot_alignment#13570
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aman-coder03 commented Dec 30, 2025

What does this PR do?

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Backward compatibility

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