[dependabot]: Bump the actions group with 3 updates - #13871

* [pre-commit.ci] pre-commit autoupdate (mne-tools#13646)

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* Fix and extend anonymize_info (mne-tools#13647)

* Fix epochs.plot() scrollbar issue (mne-tools#13654)

* ENH: Add optional channel name overlay to plot_alignment (mne-tools#13570)

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* Fix docstrings for get_data() (mne-tools#13652)

* DOC: Add detail to make_watershed_bem volume parameter (mne-tools#13658)

* [pre-commit.ci] pre-commit autoupdate (mne-tools#13663)

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* update maintainers lists (mne-tools#13631)

* Fixes make_scalp_surfaces (mne-tools#13024)

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* DOC: Add pybvrf [skip azp] [skip actions] (mne-tools#13665)

* Expose bem submodule (mne-tools#13669)

* Rename `Epochs.reset_drop_log_selection()` to `Epochs.reset_index()` (mne-tools#13675)

* MAINT: Work around NumPy deprecation (mne-tools#13677)

* [pre-commit.ci] pre-commit autoupdate (mne-tools#13678)

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* Allow reading alternative nasion label (Nz) from snirf file (mne-tools#13672)

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* use a lockfile for "old" CI job (mne-tools#13490)

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* Fix bad cross-ref syntax (mne-tools#13690)

* Doc- clarify return types as instance of original type (mne-tools#13674)

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* update partner institution list (mne-tools#13668)

* MAINT: Update code credit (mne-tools#13709)

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* [pre-commit.ci] pre-commit autoupdate (mne-tools#13716)

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* DOC: clarify index mismatch in Epochs.drop when epochs are auto-dropped (mne-tools#13688)

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* ENH: support per-vertex opacity in 3D overlays (mne-tools#13706)

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* FIX: Spelling [ci skip]

* Fix generation of lockfile for old job (mne-tools#13724)

* eyetrack should not count as picks=data (mne-tools#13723)

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* BUG: prevent NaNs in layered overlay compositing when resulting alpha is zero (mne-tools#13714)

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* Added HEDAnnotations (mne-tools#13059)

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* [dependabot]: Bump the actions group with 2 updates (mne-tools#13728)

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* [pre-commit.ci] pre-commit autoupdate (mne-tools#13734)

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* Raising meaningful warnings/errors for interpolate_bads, when supplie… (mne-tools#13518)

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* BUG: Fix bug with default (mne-tools#13744)

* DOC: document first_samp behavior after crop and RawArray workaround (mne-tools#13685)

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* FIX: do not print dev_head_t if not available (mne-tools#13741)

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* FIX: Link [ci skip]

* Update name [ci skip]

* MAINT: cleanup Python 3.9 compat from __future__ import annotations (mne-tools#13749)

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* FIX: Handle hidden annotations during deletion in mpl plot (mne-tools#13703)

* ENH: Log scaling better (mne-tools#13758)

* [pre-commit.ci] pre-commit autoupdate (mne-tools#13762)

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* FORWARD: assert invariant for unreachable rref branch in _lead_dots (mne-tools#13764)

* Improve handling of dropped epochs in ica.plot_properties (mne-tools#13746)

* Support mixed hed annotations, concat and solve version registration (mne-tools#13736)

* ENH: compute CSD directly for upper-triangle channel pairs in Fourier/multitaper (mne-tools#13719)

* Extend plot_csd support to SEEG, ECoG, and DBS channel types (mne-tools#13713)

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* Add example for Python/R interoperability using mass univariate t-test (mne-tools#13729)

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* [BUG] `IndexError` in `set_montage()` for MEG+EEG recordings when digitization is skipped (mne-tools#13700)

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* FIX: remap lowpass <= 0 to Nyquist in GDF/EDF reader (mne-tools#13769)

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* FIX: correct spacing attribute in SourceMorph when src_to is provided (mne-tools#13687)

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* [pre-commit.ci] pre-commit autoupdate (mne-tools#13779)

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* fix bad xrefs in changelog (mne-tools#13783)

* DOC: fix invalid cross-reference in 13700 changelog entry (mne-tools#13785)

* FIX: raise clear ValueError when no ECG events found in create_ecg_ep… (mne-tools#13771)

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* ENH: Add native save and read support for SSD (mne-tools#13718)

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* ENH: Add variance regularization to F-statistic in f_oneway (mne-tools#13698)

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* [pre-commit.ci] pre-commit autoupdate (mne-tools#13802)

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* ENH: allow per-channel colors in raw.plot via channel name dict keys (mne-tools#13765)

* Fix top and bottom clipping in raw.plot() (mne-tools#13787)

* MAINT: Update code credit (mne-tools#13805)

* FIX: short-circuit n_jobs=None to n_jobs=1 without Parallel setup (mne-tools#13777)

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* Replacing abstractclassmethod with abstractmethod (mne-tools#13806)

* ENH: expose font_file in Brain.add_text (mne-tools#13778)

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* ENH: add cmap parameter to Evoked.animate_topomap (mne-tools#13756)

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* MAINT: Install SciPy pre (mne-tools#13807)

* ENH: Replace custom _whosmat_hdf5 with pymatreader.whosmat (mne-tools#13753)

* MAINT: Make sys_info more robust (mne-tools#13810)

* MAINT: Remove tomli, tomlsort, and ruff from `test` group (mne-tools#13809)

* BUG: Fix bug with fwd.info["dev_head_t"] setting (mne-tools#13619)

* ENH: Add initial BCI2000 .dat reader (preload-only) (mne-tools#13699)

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* Add pybispectra as related software (mne-tools#13812)

* DOC: Fix type annotation for order parameter in Epochs.plot() (mne-tools#13639)

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* [dependabot]: Bump the actions group with 2 updates (mne-tools#13817)

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* fixed some info fields in MEG interpolation across sensor types using… (mne-tools#13759)

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* ENH: Add support for plotting ICA source timecourses in Report.add_ica (mne-tools#13697)

* FIX: correct sensor name ordering in plot_topomap when using Info object (mne-tools#13686)

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* MAINT: Update dependency specifiers (mne-tools#13814)

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* [pre-commit.ci] pre-commit autoupdate (mne-tools#13818)

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* MAINT: Update code credit [ci skip] (mne-tools#13823)

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* Update values to int64 (mne-tools#13548)

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* FIX: Installer links etc [ci skip]

* TST: Doc

* FIX: correct mode parameter in get_point_spread and get_cross_talk (mne-tools#13754)

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* DOC: Add epoch quality example (mne-tools#13710)

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* Change syncing of dependencies with `README` (mne-tools#13832)

* DOC: Fix changelog [circle deploy] (mne-tools#13833)

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* Exclude private submodules (e.g., _edf) from Credits page (mne-tools#13673)

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* BUG: Fix bug with backward compat [circle deploy] (mne-tools#13835)

* Fix bug with credit [circle deploy] (mne-tools#13841)

* ENH: broaden OPM coil handling for colocated topomaps (mne-tools#13825)

* DOC: Add artifact-cleaning note to epoch quality example. (mne-tools#13827)

* [pre-commit.ci] pre-commit autoupdate (mne-tools#13839)

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* FIX: Ref [skip azp] [skip actions]

* BUG: Fix bug with logging level (mne-tools#13843)

* fix env var in actions (mne-tools#13844)

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* TST: Add regression coverage for OPM topomap grouping via `plot_joint()` and `ICA` (mne-tools#13842)

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* Customize annotation colors (mne-tools#13838)

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* DOC: Remove invalid ndarray option from colormap docstrings (mne-tools#13797)

* Fix versionadded for annotation_colors (mne-tools#13853)

* [dependabot]: Bump the actions group with 2 updates (mne-tools#13852)

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* [pre-commit.ci] pre-commit autoupdate (mne-tools#13854)

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* MAINT: Links [circle deploy] [skip azp] [skip actions]

* MAINT: add OPM overlap grouping helper (mne-tools#13847)

* FIX: Correct fNIRS interpolation with reordered picks (mne-tools#13856)

* MAINT: Modernize numpydoc checks (mne-tools#13865)

* Allow concatenating `BaseRaw` objects (mne-tools#13263)

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* Add dark theme to Matplotlib-based raw.plot (mne-tools#13861)

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* FIX: Check [ci skip]

* FIX: Sets [ci skip]

* Update towncrier change type descriptions (mne-tools#13829)

* fix numpydoc (missed YD01 ignore) (mne-tools#13868)

* FIX: correct label orientation for 0-90 deg nodes in plot_connectivity_circle (mne-tools#13855)

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* [dependabot]: Bump the actions group with 3 updates (mne-tools#13871)

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* [pre-commit.ci] pre-commit autoupdate (mne-tools#13873)

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* Add preload keyward argument to Inst.load_data() method call (mne-tools#13858)

* MAINT: Make test dir read-only (mne-tools#13872)

* BUG: improve FreeSurfer error message when executable not found (mne-tools#13874)

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* add CI description to contributing guide (mne-tools#13837)

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* Fix grammar [ci skip] (mne-tools#13881)

* FIX: handle missing __version__ in check_version (mne-tools#13870)

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* apply diataxis to tutorials/inverse/80_brainstorm_phantom_elekta.py (mne-tools#13584)

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* add AI policy (mne-tools#13883)

* MAINT: Switch to pip for macOS and minimal jobs (mne-tools#13882)

* MAINT: Update code credit (mne-tools#13878)

* ENH:  Allow passing source detector distances to beer lambert law (mne-tools#13875)

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* MAINT: Update for vtk deprecation (mne-tools#13886)

* ENH: Add overrides= parameter to read_raw_brainvision for BIDS header repair (mne-tools#13884)

* Fix bug with ica.plot_properties (mne-tools#13885)

* Fix `picks` being ignored in `Epochs.apply_function()` (mne-tools#13894)

* Update describing changes in contributing guide (mne-tools#13895)

* Add Zuna to related software list (mne-tools#13849)

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* [dependabot]: Bump github/codeql-action from 4.35.2 to 4.35.3 in the actions group (mne-tools#13897)

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* DOC: Fix apply_function shape description for Epochs (mne-tools#13891)

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* Raise warning and errors when np.nan provided to mne.stats.permutation_t_test(). (mne-tools#13813)

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* MAINT: Update dependency specifiers (mne-tools#13899)

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* [dependabot]: Bump github/codeql-action from 4.35.3 to 4.35.4 in the actions group (mne-tools#13901)

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* [pre-commit.ci] pre-commit autoupdate (mne-tools#13902)

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* MAINT: Remove workaround for old PySide6 (mne-tools#13900)

* Add spherical montages (mne-tools#13903)

* [dependabot]: Bump the actions group with 2 updates (mne-tools#13918)

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* [pre-commit.ci] pre-commit autoupdate (mne-tools#13919)

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* MAINT: Update dependency specifiers (mne-tools#13916)

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* BUG: set_eeg_reference list ch_type now applies per-type CAR by default (mne-tools#13920)

* FIX: Avoid iteration errors caused by None when reading Nihon Kohden .LOG files (mne-tools#13915)

* Fix drop_log dtype (mne-tools#13923)

* Doc: add guidance on taking over a stale pull request (mne-tools#13877)

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* FIX: Make set_eeg_reference working with a string for a channel name (mne-tools#13917)

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Co-authored-by: Ben Tang <[email protected]>
Co-authored-by: myd7349 <[email protected]>
Co-authored-by: Michael Straube <[email protected]>