MAINT: Remove tomli, tomlsort, and ruff from `test` group by larsoner · Pull Request #13809 · mne-tools/mne-python

larsoner · 2026-04-03T05:10:39Z

tomli, toml-sort, and ruff are installed by pre-commit install --install-hooks and are invoked using pre-commit calls nowadays. We shouldn't have them in test deps, as they're not needed as --group installs for standard testing / dev routines. If ruff still seems useful for devs, it could maybe be moved to dev not test (it's not needed for any of the tests we run on CIs or locally), but even this seems unnecessary in practice nowadays.

Closes #13796

larsoner · 2026-04-03T05:12:13Z

codespell, on the other hand, still has a Makefile target that is not routed through pre-commit. So I think that one can stay in test for now. This is especially true since it runs in interactive mode there, so make codespell could still be useful to some folks.

drammock · 2026-04-03T11:39:08Z

tomli, toml-sort, and ruff are installed by pre-commit install --install-hooks and are invoked using pre-commit calls nowadays

Won't they still be needed in the main env for IDE integrations to work? If only pre-commit installs them, they'll be in a separate env

larsoner · 2026-04-03T12:29:12Z

Oh I hadn't thought about IDEs... So maybe keep ruff then? Doesn't seem like the TOML ones would be needed/used by IDEs?

drammock · 2026-04-03T12:52:39Z

Yeah I'd say keep ruff. Personally I have toml-focused IDE integrations too, but I doubt most folks do

larsoner · 2026-04-03T12:57:14Z

Okay fixed!

Ready for merge unless I should also make the rpy2->doc-full change suggested in #13796 (comment)

drammock · 2026-04-03T13:16:02Z

Okay fixed!

Ready for merge unless I should also make the rpy2->doc-full change suggested in #13796 (comment)

might as well?

larsoner · 2026-04-03T15:26:18Z

Okay pushed, feel free to mark for merge-when-green if you're happy @drammock !

larsoner · 2026-04-03T15:30:58Z

-  "rpy2",
  "scikit-learn >= 1.4",  # released 2024-01-18, will become 1.5 on 2026-05-21
  "seaborn >= 0.5, != 0.11.2",
  "selenium >= 4.27.1",


Maybe this one should move, too -- this is really only needed for making the contrib viz which only CircleCI does on a regular basis. But we can add stuff like this later if it becomes problematic (haven't heard many complaints about selenium installs so far)

larsoner · 2026-04-03T15:57:14Z

Uggghh several failures in main actually

https://app.circleci.com/pipelines/github/mne-tools/mne-python/31021/workflows/48d1d88b-7bb9-4378-969c-e6230e1241d9/jobs/80772

I'll try to fix here 😓

larsoner · 2026-04-03T16:03:33Z

This one worked for rpy2 but this one failed. I have no idea why one passes and the other doesn't. I'll probably try installing rpy2 with no cache to see if that helps...

larsoner · 2026-04-03T16:20:04Z

I'll mark this for merge-when-green to get us back to a working state, and since @drammock seemed happy. I'm happy to open a follow-up PR if there are additional comments though!

larsoner · 2026-04-03T16:25:51Z

Successful rpy2 one worked early morning March 27, failed March 28th. rpy2 had a release on the 27th. A pin should fix it hopefully

* upstream/main: (83 commits) [pre-commit.ci] pre-commit autoupdate (mne-tools#13818) MAINT: Update dependency specifiers (mne-tools#13814) FIX: correct sensor name ordering in plot_topomap when using Info object (mne-tools#13686) ENH: Add support for plotting ICA source timecourses in Report.add_ica (mne-tools#13697) fixed some info fields in MEG interpolation across sensor types using… (mne-tools#13759) [dependabot]: Bump the actions group with 2 updates (mne-tools#13817) DOC: Fix type annotation for order parameter in Epochs.plot() (mne-tools#13639) Add pybispectra as related software (mne-tools#13812) ENH: Add initial BCI2000 .dat reader (preload-only) (mne-tools#13699) BUG: Fix bug with fwd.info["dev_head_t"] setting (mne-tools#13619) MAINT: Remove tomli, tomlsort, and ruff from `test` group (mne-tools#13809) MAINT: Make sys_info more robust (mne-tools#13810) ENH: Replace custom _whosmat_hdf5 with pymatreader.whosmat (mne-tools#13753) MAINT: Install SciPy pre (mne-tools#13807) ENH: add cmap parameter to Evoked.animate_topomap (mne-tools#13756) ENH: expose font_file in Brain.add_text (mne-tools#13778) Replacing abstractclassmethod with abstractmethod (mne-tools#13806) FIX: short-circuit n_jobs=None to n_jobs=1 without Parallel setup (mne-tools#13777) MAINT: Update code credit (mne-tools#13805) Fix top and bottom clipping in raw.plot() (mne-tools#13787) ...

* [pre-commit.ci] pre-commit autoupdate (mne-tools#13646) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: mne[bot] <[email protected]> * Fix and extend anonymize_info (mne-tools#13647) * Fix epochs.plot() scrollbar issue (mne-tools#13654) * ENH: Add optional channel name overlay to plot_alignment (mne-tools#13570) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Daniel McCloy <[email protected]> * Fix docstrings for get_data() (mne-tools#13652) * DOC: Add detail to make_watershed_bem volume parameter (mne-tools#13658) * [pre-commit.ci] pre-commit autoupdate (mne-tools#13663) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: mne[bot] <[email protected]> * update maintainers lists (mne-tools#13631) * Fixes make_scalp_surfaces (mne-tools#13024) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Marijn van Vliet <[email protected]> Co-authored-by: Eric Larson <[email protected]> * DOC: Add pybvrf [skip azp] [skip actions] (mne-tools#13665) * Expose bem submodule (mne-tools#13669) * Rename `Epochs.reset_drop_log_selection()` to `Epochs.reset_index()` (mne-tools#13675) * MAINT: Work around NumPy deprecation (mne-tools#13677) * [pre-commit.ci] pre-commit autoupdate (mne-tools#13678) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: mne[bot] <[email protected]> * Allow reading alternative nasion label (Nz) from snirf file (mne-tools#13672) Co-authored-by: Daniel McCloy <[email protected]> * use a lockfile for "old" CI job (mne-tools#13490) Co-authored-by: Carina Forster <[email protected]> Co-authored-by: Thomas S. Binns <[email protected]> Co-authored-by: Scott Huberty <[email protected]> Co-authored-by: Erica Peterson <[email protected]> Co-authored-by: Eric Larson <[email protected]> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * Fix bad cross-ref syntax (mne-tools#13690) * Doc- clarify return types as instance of original type (mne-tools#13674) Co-authored-by: Marijn van Vliet <[email protected]> * update partner institution list (mne-tools#13668) * MAINT: Update code credit (mne-tools#13709) Co-authored-by: Eric Larson <[email protected]> * [pre-commit.ci] pre-commit autoupdate (mne-tools#13716) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: mne[bot] <[email protected]> * DOC: clarify index mismatch in Epochs.drop when epochs are auto-dropped (mne-tools#13688) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Thomas S. Binns <[email protected]> Co-authored-by: Daniel McCloy <[email protected]> * ENH: support per-vertex opacity in 3D overlays (mne-tools#13706) Co-authored-by: Eric Larson <[email protected]> * FIX: Spelling [ci skip] * Fix generation of lockfile for old job (mne-tools#13724) * eyetrack should not count as picks=data (mne-tools#13723) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Scott Huberty <[email protected]> * BUG: prevent NaNs in layered overlay compositing when resulting alpha is zero (mne-tools#13714) Co-authored-by: Marijn van Vliet <[email protected]> * Added HEDAnnotations (mne-tools#13059) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Daniel McCloy <[email protected]> Co-authored-by: Bru <[email protected]> Co-authored-by: Stefan Appelhoff <[email protected]> * [dependabot]: Bump the actions group with 2 updates (mne-tools#13728) Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: mne[bot] <[email protected]> Co-authored-by: Eric Larson <[email protected]> * [pre-commit.ci] pre-commit autoupdate (mne-tools#13734) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: mne[bot] <[email protected]> Co-authored-by: Eric Larson <[email protected]> * Raising meaningful warnings/errors for interpolate_bads, when supplie… (mne-tools#13518) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * BUG: Fix bug with default (mne-tools#13744) * DOC: document first_samp behavior after crop and RawArray workaround (mne-tools#13685) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * FIX: do not print dev_head_t if not available (mne-tools#13741) Co-authored-by: Eric Larson <[email protected]> * FIX: Link [ci skip] * Update name [ci skip] * MAINT: cleanup Python 3.9 compat from __future__ import annotations (mne-tools#13749) Co-authored-by: Marijn van Vliet <[email protected]> * FIX: Handle hidden annotations during deletion in mpl plot (mne-tools#13703) * ENH: Log scaling better (mne-tools#13758) * [pre-commit.ci] pre-commit autoupdate (mne-tools#13762) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: mne[bot] <[email protected]> Co-authored-by: Eric Larson <[email protected]> * FORWARD: assert invariant for unreachable rref branch in _lead_dots (mne-tools#13764) * Improve handling of dropped epochs in ica.plot_properties (mne-tools#13746) * Support mixed hed annotations, concat and solve version registration (mne-tools#13736) * ENH: compute CSD directly for upper-triangle channel pairs in Fourier/multitaper (mne-tools#13719) * Extend plot_csd support to SEEG, ECoG, and DBS channel types (mne-tools#13713) Co-authored-by: Thomas S. Binns <[email protected]> Co-authored-by: Marijn van Vliet <[email protected]> * Add example for Python/R interoperability using mass univariate t-test (mne-tools#13729) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Eric Larson <[email protected]> Co-authored-by: Daniel McCloy <[email protected]> * [BUG] `IndexError` in `set_montage()` for MEG+EEG recordings when digitization is skipped (mne-tools#13700) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * FIX: remap lowpass <= 0 to Nyquist in GDF/EDF reader (mne-tools#13769) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * FIX: correct spacing attribute in SourceMorph when src_to is provided (mne-tools#13687) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * [pre-commit.ci] pre-commit autoupdate (mne-tools#13779) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: mne[bot] <[email protected]> Co-authored-by: Eric Larson <[email protected]> * fix bad xrefs in changelog (mne-tools#13783) * DOC: fix invalid cross-reference in 13700 changelog entry (mne-tools#13785) * FIX: raise clear ValueError when no ECG events found in create_ecg_ep… (mne-tools#13771) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Daniel McCloy <[email protected]> * ENH: Add native save and read support for SSD (mne-tools#13718) Co-authored-by: Thomas S. Binns <[email protected]> * ENH: Add variance regularization to F-statistic in f_oneway (mne-tools#13698) Co-authored-by: Daniel McCloy <[email protected]> * [pre-commit.ci] pre-commit autoupdate (mne-tools#13802) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: mne[bot] <[email protected]> * ENH: allow per-channel colors in raw.plot via channel name dict keys (mne-tools#13765) * Fix top and bottom clipping in raw.plot() (mne-tools#13787) * MAINT: Update code credit (mne-tools#13805) * FIX: short-circuit n_jobs=None to n_jobs=1 without Parallel setup (mne-tools#13777) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Daniel McCloy <[email protected]> Co-authored-by: autofix-ci[bot] <114827586+autofix-ci[bot]@users.noreply.github.com> * Replacing abstractclassmethod with abstractmethod (mne-tools#13806) * ENH: expose font_file in Brain.add_text (mne-tools#13778) Co-authored-by: Daniel McCloy <[email protected]> Co-authored-by: Marijn van Vliet <[email protected]> * ENH: add cmap parameter to Evoked.animate_topomap (mne-tools#13756) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * MAINT: Install SciPy pre (mne-tools#13807) * ENH: Replace custom _whosmat_hdf5 with pymatreader.whosmat (mne-tools#13753) * MAINT: Make sys_info more robust (mne-tools#13810) * MAINT: Remove tomli, tomlsort, and ruff from `test` group (mne-tools#13809) * BUG: Fix bug with fwd.info["dev_head_t"] setting (mne-tools#13619) * ENH: Add initial BCI2000 .dat reader (preload-only) (mne-tools#13699) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: autofix-ci[bot] <114827586+autofix-ci[bot]@users.noreply.github.com> Co-authored-by: Eric Larson <[email protected]> * Add pybispectra as related software (mne-tools#13812) * DOC: Fix type annotation for order parameter in Epochs.plot() (mne-tools#13639) Co-authored-by: Daniel McCloy <[email protected]> Co-authored-by: Scott Huberty <[email protected]> * [dependabot]: Bump the actions group with 2 updates (mne-tools#13817) Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: mne[bot] <[email protected]> * fixed some info fields in MEG interpolation across sensor types using… (mne-tools#13759) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * ENH: Add support for plotting ICA source timecourses in Report.add_ica (mne-tools#13697) * FIX: correct sensor name ordering in plot_topomap when using Info object (mne-tools#13686) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * MAINT: Update dependency specifiers (mne-tools#13814) Co-authored-by: autofix-ci[bot] <114827586+autofix-ci[bot]@users.noreply.github.com> Co-authored-by: Thomas S. Binns <[email protected]> * [pre-commit.ci] pre-commit autoupdate (mne-tools#13818) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: mne[bot] <[email protected]> * MAINT: Update code credit [ci skip] (mne-tools#13823) Co-authored-by: Eric Larson <[email protected]> * Update values to int64 (mne-tools#13548) Co-authored-by: Eric Larson <[email protected]> Co-authored-by: autofix-ci[bot] <114827586+autofix-ci[bot]@users.noreply.github.com> Co-authored-by: Daniel McCloy <[email protected]> * FIX: Installer links etc [ci skip] * TST: Doc * FIX: correct mode parameter in get_point_spread and get_cross_talk (mne-tools#13754) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * DOC: Add epoch quality example (mne-tools#13710) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Thomas S. Binns <[email protected]> * Change syncing of dependencies with `README` (mne-tools#13832) * DOC: Fix changelog [circle deploy] (mne-tools#13833) Co-authored-by: Thomas S. Binns <[email protected]> * Exclude private submodules (e.g., _edf) from Credits page (mne-tools#13673) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * BUG: Fix bug with backward compat [circle deploy] (mne-tools#13835) * Fix bug with credit [circle deploy] (mne-tools#13841) * ENH: broaden OPM coil handling for colocated topomaps (mne-tools#13825) * DOC: Add artifact-cleaning note to epoch quality example. (mne-tools#13827) * [pre-commit.ci] pre-commit autoupdate (mne-tools#13839) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: mne[bot] <[email protected]> Co-authored-by: Eric Larson <[email protected]> * FIX: Ref [skip azp] [skip actions] * BUG: Fix bug with logging level (mne-tools#13843) * fix env var in actions (mne-tools#13844) Co-authored-by: Scott Huberty <[email protected]> * TST: Add regression coverage for OPM topomap grouping via `plot_joint()` and `ICA` (mne-tools#13842) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * Customize annotation colors (mne-tools#13838) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * DOC: Remove invalid ndarray option from colormap docstrings (mne-tools#13797) * Fix versionadded for annotation_colors (mne-tools#13853) * [dependabot]: Bump the actions group with 2 updates (mne-tools#13852) Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: mne[bot] <[email protected]> * [pre-commit.ci] pre-commit autoupdate (mne-tools#13854) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: mne[bot] <[email protected]> * MAINT: Links [circle deploy] [skip azp] [skip actions] * MAINT: add OPM overlap grouping helper (mne-tools#13847) * FIX: Correct fNIRS interpolation with reordered picks (mne-tools#13856) * MAINT: Modernize numpydoc checks (mne-tools#13865) * Allow concatenating `BaseRaw` objects (mne-tools#13263) Co-authored-by: Copilot <[email protected]> Co-authored-by: Eric Larson <[email protected]> * Add dark theme to Matplotlib-based raw.plot (mne-tools#13861) Co-authored-by: Copilot <[email protected]> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * FIX: Check [ci skip] * FIX: Sets [ci skip] * Update towncrier change type descriptions (mne-tools#13829) * fix numpydoc (missed YD01 ignore) (mne-tools#13868) * FIX: correct label orientation for 0-90 deg nodes in plot_connectivity_circle (mne-tools#13855) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Daniel McCloy <[email protected]> * [dependabot]: Bump the actions group with 3 updates (mne-tools#13871) Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: mne[bot] <[email protected]> * [pre-commit.ci] pre-commit autoupdate (mne-tools#13873) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: mne[bot] <[email protected]> * Add preload keyward argument to Inst.load_data() method call (mne-tools#13858) * MAINT: Make test dir read-only (mne-tools#13872) * BUG: improve FreeSurfer error message when executable not found (mne-tools#13874) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Eric Larson <[email protected]> * add CI description to contributing guide (mne-tools#13837) Co-authored-by: Daniel McCloy <[email protected]> * Fix grammar [ci skip] (mne-tools#13881) * FIX: handle missing __version__ in check_version (mne-tools#13870) Co-authored-by: Claude Sonnet 4.6 <[email protected]> * apply diataxis to tutorials/inverse/80_brainstorm_phantom_elekta.py (mne-tools#13584) Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * add AI policy (mne-tools#13883) * MAINT: Switch to pip for macOS and minimal jobs (mne-tools#13882) * MAINT: Update code credit (mne-tools#13878) * ENH: Allow passing source detector distances to beer lambert law (mne-tools#13875) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * MAINT: Update for vtk deprecation (mne-tools#13886) * ENH: Add overrides= parameter to read_raw_brainvision for BIDS header repair (mne-tools#13884) * Fix bug with ica.plot_properties (mne-tools#13885) * Fix `picks` being ignored in `Epochs.apply_function()` (mne-tools#13894) * Update describing changes in contributing guide (mne-tools#13895) * Add Zuna to related software list (mne-tools#13849) Co-authored-by: Daniel McCloy <[email protected]> * [dependabot]: Bump github/codeql-action from 4.35.2 to 4.35.3 in the actions group (mne-tools#13897) Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: mne[bot] <[email protected]> Co-authored-by: Eric Larson <[email protected]> * DOC: Fix apply_function shape description for Epochs (mne-tools#13891) Co-authored-by: Eric Larson <[email protected]> * Raise warning and errors when np.nan provided to mne.stats.permutation_t_test(). (mne-tools#13813) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Erica R Peterson <[email protected]> * MAINT: Update dependency specifiers (mne-tools#13899) Co-authored-by: autofix-ci[bot] <114827586+autofix-ci[bot]@users.noreply.github.com> Co-authored-by: Eric Larson <[email protected]> * [dependabot]: Bump github/codeql-action from 4.35.3 to 4.35.4 in the actions group (mne-tools#13901) Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: mne[bot] <[email protected]> * [pre-commit.ci] pre-commit autoupdate (mne-tools#13902) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: mne[bot] <[email protected]> * MAINT: Remove workaround for old PySide6 (mne-tools#13900) * Add spherical montages (mne-tools#13903) * [dependabot]: Bump the actions group with 2 updates (mne-tools#13918) Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: mne[bot] <[email protected]> * [pre-commit.ci] pre-commit autoupdate (mne-tools#13919) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: mne[bot] <[email protected]> * MAINT: Update dependency specifiers (mne-tools#13916) Co-authored-by: autofix-ci[bot] <114827586+autofix-ci[bot]@users.noreply.github.com> Co-authored-by: Eric Larson <[email protected]> * BUG: set_eeg_reference list ch_type now applies per-type CAR by default (mne-tools#13920) * FIX: Avoid iteration errors caused by None when reading Nihon Kohden .LOG files (mne-tools#13915) * Fix drop_log dtype (mne-tools#13923) * Doc: add guidance on taking over a stale pull request (mne-tools#13877) Co-authored-by: Thomas S. Binns <[email protected]> Co-authored-by: Daniel McCloy <[email protected]> * FIX: Make set_eeg_reference working with a string for a channel name (mne-tools#13917) --------- Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: mne[bot] <[email protected]> Co-authored-by: Clemens Brunner <[email protected]> Co-authored-by: Aman Srivastava <[email protected]> Co-authored-by: Daniel McCloy <[email protected]> Co-authored-by: Himanshu Mahor <[email protected]> Co-authored-by: Scott Huberty <[email protected]> Co-authored-by: Victor Férat <[email protected]> Co-authored-by: Marijn van Vliet <[email protected]> Co-authored-by: Eric Larson <[email protected]> Co-authored-by: Aniket <[email protected]> Co-authored-by: Carina Forster <[email protected]> Co-authored-by: Thomas S. Binns <[email protected]> Co-authored-by: Erica Peterson <[email protected]> Co-authored-by: Horizon_Architect_07 <[email protected]> Co-authored-by: Pragnya <[email protected]> Co-authored-by: Benedikt Ehinger <[email protected]> Co-authored-by: Kay Robbins <[email protected]> Co-authored-by: Bru <[email protected]> Co-authored-by: Stefan Appelhoff <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Johannes Herforth <[email protected]> Co-authored-by: Hansuja <[email protected]> Co-authored-by: Simon Kern <[email protected]> Co-authored-by: autofix-ci[bot] <114827586+autofix-ci[bot]@users.noreply.github.com> Co-authored-by: Akhilesh <[email protected]> Co-authored-by: CHH <[email protected]> Co-authored-by: Teon L Brooks <[email protected]> Co-authored-by: Lifeng <[email protected]> Co-authored-by: Kalle Mäkelä <[email protected]> Co-authored-by: Copilot <[email protected]> Co-authored-by: Pavel Popov <[email protected]> Co-authored-by: Ayushi Satodiya <[email protected]> Co-authored-by: Seth Bashford <[email protected]> Co-authored-by: Baris <[email protected]> Co-authored-by: Claude Sonnet 4.6 <[email protected]> Co-authored-by: Jonas Mago <[email protected]> Co-authored-by: Bhargav Kowshik <[email protected]> Co-authored-by: Erica R Peterson <[email protected]> Co-authored-by: Ben Tang <[email protected]> Co-authored-by: myd7349 <[email protected]> Co-authored-by: Michael Straube <[email protected]>

MAINT: Remove tomli and tomlsort from test deps

08b9609

larsoner requested a review from drammock as a code owner April 3, 2026 05:10

larsoner added the no-changelog-entry-needed label Apr 3, 2026

larsoner added this to the 1.12 milestone Apr 3, 2026

Restore ruff

a52945c

FIX: Groups

a27138c

larsoner requested a review from agramfort as a code owner April 3, 2026 15:25

larsoner mentioned this pull request Apr 3, 2026

MAINT: Bump Qt6 mne-tools/mne-installers#427

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larsoner commented Apr 3, 2026

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FIX: Fix examples

b6f1d7c

larsoner enabled auto-merge (squash) April 3, 2026 16:20

larsoner added 2 commits April 3, 2026 12:27

FIX: Joy

9f337f4

FIX: Maybe

e7ce877

larsoner merged commit afdae06 into mne-tools:main Apr 3, 2026
32 checks passed

larsoner deleted the pyproject branch April 3, 2026 18:33

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MAINT: Remove tomli, tomlsort, and ruff from `test` group - #13809

MAINT: Remove tomli, tomlsort, and ruff from `test` group#13809
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