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FIX: short-circuit n_jobs=None to n_jobs=1 without Parallel setup - #13777

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skjerns:fix_njobs_none
Apr 1, 2026
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nordme merged 14 commits into
mne-tools:mainfrom
skjerns:fix_njobs_none

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@skjerns

@skjerns skjerns commented Mar 22, 2026 •

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Fixes #13770.

What does this implement/fix?

As laid out, when a parallel function is prepared using n_jobs=None, it runs the complete parallel function setup including a file read. This creates overhead that is unnecessary. It should be safe to only check whether there's another n_jobs overwriting it via a context manager and else just set it to 1.

This fix short-circuits the logic: If n_jobs=None it quickly resorts to set n_jobs=1, unless we are in a joblib parallel config.

@skjerns skjerns changed the title short-circuit n_jobs=None to n_jobs=1 without Parallel setup ENH: short-circuit n_jobs=None to n_jobs=1 without Parallel setup Mar 22, 2026
@skjerns skjerns changed the title ENH: short-circuit n_jobs=None to n_jobs=1 without Parallel setup BUG: short-circuit n_jobs=None to n_jobs=1 without Parallel setup Mar 22, 2026
@skjerns skjerns changed the title BUG: short-circuit n_jobs=None to n_jobs=1 without Parallel setup FIX: short-circuit n_jobs=None to n_jobs=1 without Parallel setup Mar 22, 2026
@nordme

nordme commented Mar 23, 2026

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Hi @skjerns! Thanks for the PR!

I took a quick look at your code and CircleCI errors, and it looks like the n_jobs test function you added is having some trouble. A couple suggestions / refresh points: 1. When we pass a parameter like n_jobs to a test function, we've got to set up an n_jobs fixture so we've got something there to pass in. The other test function in the test_parallel.py file is a good example. You'll need to add the fixture for your test to pass. 2. Generally, a good practice is to run the test files locally to make sure your tests pass on your system, then do your pushes. This just helps us conserve CircleCi resources!

Cheers.

@skjerns

skjerns commented Mar 23, 2026

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Hi @skjerns! Thanks for the PR!

I took a quick look at your code and CircleCI errors, and it looks like the n_jobs test function you added is having some trouble. A couple suggestions / refresh points: 1. When we pass a parameter like n_jobs to a test function, we've got to set up an n_jobs fixture so we've got something there to pass in. The other test function in the test_parallel.py file is a good example. You'll need to add the fixture for your test to pass. 2. Generally, a good practice is to run the test files locally to make sure your tests pass on your system, then do your pushes. This just helps us conserve CircleCi resources!

Cheers.

sorry, you are absolutely right 🙈 I tested the code line-by-line locally, but without pytest, and have a habit of testing with CI, I should change that.

Anyway, I think now it's fixed

Comment thread doc/changes/dev/13777.bugfix.rst Outdated
@skjerns

skjerns commented Mar 24, 2026 •

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I think the pip errors are unrelated?

not sure why the azure build fails though :-/ it works locally. Any ideas?

mne\tests\test_parallel.py:73: in test_parallel_func_n_jobs_none
    assert parallel is not list
E   AssertionError: assert <class 'list'> is not list

Comment thread mne/tests/test_parallel.py Outdated
# Test that n_jobs=None inside a joblib context uses Parallel.
with joblib.parallel_config(backend="loky", n_jobs=2):
parallel, p_fun, n_jobs = parallel_func(fun, n_jobs=None)
assert parallel is not list

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Not sure why this doesn't work on Windows, but I know there are some quirks there (e.g., this). Maybe for simplicity just skip this test on Windows and add a TODO comment to look into it someday...?

@larsoner

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... and unrelated pip-pre failures should be fixed by a tiny tweak I put into #13779

@skjerns

skjerns commented Mar 27, 2026

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Tests are passing now! Review appreciated :)

@nordme
nordme merged commit 6de3409 into mne-tools:main Apr 1, 2026
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@drammock

drammock commented Apr 1, 2026

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thanks @skjerns!

@nordme

nordme commented Apr 1, 2026

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Thanks for the PR, @skjerns !

larsoner added a commit to teonbrooks/mne-python that referenced this pull request Apr 7, 2026
* upstream/main: (83 commits)
  [pre-commit.ci] pre-commit autoupdate (mne-tools#13818)
  MAINT: Update dependency specifiers (mne-tools#13814)
  FIX: correct sensor name ordering in plot_topomap when using Info object (mne-tools#13686)
  ENH: Add support for plotting ICA source timecourses in Report.add_ica (mne-tools#13697)
  fixed some info fields in MEG interpolation across sensor types using… (mne-tools#13759)
  [dependabot]: Bump the actions group with 2 updates (mne-tools#13817)
  DOC: Fix type annotation for order parameter in Epochs.plot() (mne-tools#13639)
  Add pybispectra as related software (mne-tools#13812)
  ENH: Add initial BCI2000 .dat reader (preload-only) (mne-tools#13699)
  BUG: Fix bug with fwd.info["dev_head_t"] setting (mne-tools#13619)
  MAINT: Remove tomli, tomlsort, and ruff from `test` group (mne-tools#13809)
  MAINT: Make sys_info more robust (mne-tools#13810)
  ENH: Replace custom _whosmat_hdf5 with pymatreader.whosmat (mne-tools#13753)
  MAINT: Install SciPy pre (mne-tools#13807)
  ENH: add cmap parameter to Evoked.animate_topomap (mne-tools#13756)
  ENH: expose font_file in Brain.add_text (mne-tools#13778)
  Replacing abstractclassmethod with abstractmethod (mne-tools#13806)
  FIX: short-circuit n_jobs=None to n_jobs=1 without Parallel setup (mne-tools#13777)
  MAINT: Update code credit (mne-tools#13805)
  Fix top and bottom clipping in raw.plot() (mne-tools#13787)
  ...
harrisonritz added a commit to harrisonritz/mne-python that referenced this pull request May 27, 2026
* [pre-commit.ci] pre-commit autoupdate (mne-tools#13646)

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* ENH: compute CSD directly for upper-triangle channel pairs in Fourier/multitaper (mne-tools#13719)

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* Fix `picks` being ignored in `Epochs.apply_function()` (mne-tools#13894)

* Update describing changes in contributing guide (mne-tools#13895)

* Add Zuna to related software list (mne-tools#13849)

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* [dependabot]: Bump github/codeql-action from 4.35.2 to 4.35.3 in the actions group (mne-tools#13897)

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* DOC: Fix apply_function shape description for Epochs (mne-tools#13891)

Co-authored-by: Eric Larson <[email protected]>

* Raise warning and errors when np.nan provided to mne.stats.permutation_t_test(). (mne-tools#13813)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
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* MAINT: Update dependency specifiers (mne-tools#13899)

Co-authored-by: autofix-ci[bot] <114827586+autofix-ci[bot]@users.noreply.github.com>
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* [dependabot]: Bump github/codeql-action from 4.35.3 to 4.35.4 in the actions group (mne-tools#13901)

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
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* [pre-commit.ci] pre-commit autoupdate (mne-tools#13902)

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* MAINT: Remove workaround for old PySide6 (mne-tools#13900)

* Add spherical montages (mne-tools#13903)

* [dependabot]: Bump the actions group with 2 updates (mne-tools#13918)

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
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* [pre-commit.ci] pre-commit autoupdate (mne-tools#13919)

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Co-authored-by: mne[bot] <[email protected]>

* MAINT: Update dependency specifiers (mne-tools#13916)

Co-authored-by: autofix-ci[bot] <114827586+autofix-ci[bot]@users.noreply.github.com>
Co-authored-by: Eric Larson <[email protected]>

* BUG: set_eeg_reference list ch_type now applies per-type CAR by default (mne-tools#13920)

* FIX: Avoid iteration errors caused by None when reading Nihon Kohden .LOG files (mne-tools#13915)

* Fix drop_log dtype (mne-tools#13923)

* Doc: add guidance on taking over a stale pull request (mne-tools#13877)

Co-authored-by: Thomas S. Binns <[email protected]>
Co-authored-by: Daniel McCloy <[email protected]>

* FIX: Make set_eeg_reference working with a string for a channel name (mne-tools#13917)

---------

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
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Co-authored-by: Erica Peterson <[email protected]>
Co-authored-by: Horizon_Architect_07 <[email protected]>
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n_jobs=None triggers complete parallel setup with ~200x overhead

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